View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_10 (Length: 372)
Name: NF11947_low_10
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 41122605 - 41122739
Alignment:
| Q |
1 |
taaataataatggaatgaaaaagaagtatacggggtgagattaatggtgtacgtaaccgttcaaatcacaaatgttgtattatccaaaaaacggtggtta |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41122605 |
taaataataatggaatgaaaaagaagtatacagggtgagattaatggtgtacgtaaccgttcaaatcacaaatgttgtattatccaaaaaacggtggtta |
41122704 |
T |
|
| Q |
101 |
caaaagggaaacattccacaaattcacatataatt |
135 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
41122705 |
caaaagggaaactttccacaaattcacatataatt |
41122739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 41122862 - 41122971
Alignment:
| Q |
245 |
tcaattaaaaagaaaacctgaatattgatggtggttgattcatgcatggtgtcctcatcatgttacaaagttgttgtcaactaaatttcggaagtaaaaa |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41122862 |
tcaattaaaaagaaaacctgaatattgatggtggttgattcatgcatggtgtcctcatcatgttacaaagttgttgtcaactaaatttcggaagtaaaaa |
41122961 |
T |
|
| Q |
345 |
gagacaaaca |
354 |
Q |
| |
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|||||||||| |
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| T |
41122962 |
gagacaaaca |
41122971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 39442810 - 39442944
Alignment:
| Q |
1 |
taaataataatggaatgaaaaagaagtatacggggtgagattaatggtgtacgtaaccgttcaaatcacaaatgttgtattatccaaaaaacggtggtta |
100 |
Q |
| |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39442810 |
taaataataatggaatgaaaaagaagtttacagggtgagattaatggtgtacataaccgttcaaatcacaaatgttgtattatccaaaaaacggtggtta |
39442909 |
T |
|
| Q |
101 |
caaaagggaaacattccacaaattcacatataatt |
135 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |
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| T |
39442910 |
caaaagggaaactttccacaaattcacatataatt |
39442944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 245 - 354
Target Start/End: Original strand, 39443068 - 39443177
Alignment:
| Q |
245 |
tcaattaaaaagaaaacctgaatattgatggtggttgattcatgcatggtgtcctcatcatgttacaaagttgttgtcaactaaatttcggaagtaaaaa |
344 |
Q |
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|||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39443068 |
tcaattaaaaagaaaaactgaatattgacagcggttgattcatgcatggtgtcctcatcatgttacaaagttgttgtcaactaaatttcggaagtaaaaa |
39443167 |
T |
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| Q |
345 |
gagacaaaca |
354 |
Q |
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|||||||||| |
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| T |
39443168 |
gagacaaaca |
39443177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 19703713 - 19703681
Alignment:
| Q |
276 |
tggttgattcatgcatggtgtcctcatcatgtt |
308 |
Q |
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||||||||||||| ||||||||||||||||||| |
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|
| T |
19703713 |
tggttgattcatgtatggtgtcctcatcatgtt |
19703681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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