View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_15 (Length: 279)
Name: NF11947_low_15
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 32923216 - 32923485
Alignment:
| Q |
1 |
aattaaccaaatatttatgcaggcaacagcaggtttaaggcttttgaatggggatgcttctgaaaaaatactgcaatcggtaaccataagtttaattttg |
100 |
Q |
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| T |
32923216 |
aattaaccaaatatttatgcaggcaacagcaggtttaaggcttttgaatggggatgcttctgaaaaaatactgcaatcggtaaccataagtttaattttg |
32923315 |
T |
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| Q |
101 |
ttattcaatagttcaataatgttataattagctgttaggtgttaagcttaatttcatgctcccatttaattaccttaggtaagggatttgttcagcaata |
200 |
Q |
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| T |
32923316 |
ttattcaatagttcaataatgttataattagctgttaggtgttaagcttaatttcgtgctcccatttaattaccttaggtaagggatttgttcagcaata |
32923415 |
T |
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| Q |
201 |
gaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttatctctg |
270 |
Q |
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| T |
32923416 |
gaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttatctctg |
32923485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 32911528 - 32911632
Alignment:
| Q |
166 |
ttaattaccttaggtaagggatttgttcagcaatagaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttat |
265 |
Q |
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| T |
32911528 |
ttaattaccttaggtaagggatatgttcagcaatagaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttat |
32911627 |
T |
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| Q |
266 |
ctctg |
270 |
Q |
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||||| |
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| T |
32911628 |
ctctg |
32911632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 105
Target Start/End: Original strand, 32911363 - 32911450
Alignment:
| Q |
18 |
tgcaggcaacagcaggtttaaggcttttgaatggggatgcttctgaaaaaatactgcaatcggtaaccataagtttaattttgttatt |
105 |
Q |
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| T |
32911363 |
tgcaggcaaccgcaggtttaaggcttttgaatggggatgcttctgaaaagatattgcaagcggtaattattagtttaattttgttatt |
32911450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 32934246 - 32934322
Alignment:
| Q |
189 |
tgttcagcaatagaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttat |
265 |
Q |
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| T |
32934246 |
tgttcagtaacagaagtaccctcaacgttcaaagtgatgcagtttctattatagatggaacccaagaaggttcttat |
32934322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 32934076 - 32934148
Alignment:
| Q |
17 |
atgcaggcaacagcaggtttaaggcttttgaatggggatgcttctgaaaaaatactgcaatcggtaaccataa |
89 |
Q |
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| T |
32934076 |
atgcaggcaaccgcaggtttgaggcttttgaatggggatgctgccgaaaagatattgcaagcggtaaccataa |
32934148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 11823431 - 11823696
Alignment:
| Q |
4 |
taaccaaatatttatgcaggcaacagcaggtttaaggcttttgaatgggg-atgcttctgaaaaaatactgcaatcggtaaccataagtttaattttgtt |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11823431 |
taacaaaatatttatgcaggcaacagcaggtttaaggcttttgaatgggggatgcttctgaaaagatactgcaatcggtaaccataagtttaattttgtt |
11823530 |
T |
|
| Q |
103 |
attcaatagttcaataatgttataat--tagctgttaggtgttaagcttaatttcatgctc---ccatttaattaccttaggtaagggatttgttcagca |
197 |
Q |
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| T |
11823531 |
attcaacagttcaataatgttataatagaaactttaa----ttaagcttaatttcgtgctcccaccatttaattaccttaggtaagggatttgttgagca |
11823626 |
T |
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| Q |
198 |
atagaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttatct |
267 |
Q |
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| T |
11823627 |
acagaagtaccttcaatgttcaacctgatgcagtttctattattgatggaacccaagaaggttcttatct |
11823696 |
T |
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