View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_16 (Length: 271)
Name: NF11947_low_16
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 70 - 243
Target Start/End: Original strand, 41614818 - 41614991
Alignment:
| Q |
70 |
ccacattgaaaaaatagcattaaagtgaagatataaataaagaattgtgtgtcaattctttgataaattgtttaactagtagttgaattataaaacagcg |
169 |
Q |
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| T |
41614818 |
ccacattgaaaaaatagcattaaagtgaagatataaataaagaattgtgtgtcaattctttgataaattgtttaagtagtagttgaattataaaacagcg |
41614917 |
T |
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| Q |
170 |
acgctatcaattgaggatatatttacttcccagttgttaggggcattgtgttttcaaattcatctgctacttaa |
243 |
Q |
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| T |
41614918 |
tcggtatcaattgaggatatatttacttcccaattgttaggggcattgtgttttcaaattcatctgctacttaa |
41614991 |
T |
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Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 41614613 - 41614680
Alignment:
| Q |
5 |
tagacacaacctttgttggtcaaagaatacttgtttatgaccttcaaaacaaacaaatgtatattcca |
72 |
Q |
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| T |
41614613 |
tagacacaacctttgttggtcaaagaatatttgtttatgaccttcaaaacaaacaaatgtatattcca |
41614680 |
T |
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