View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11947_low_17 (Length: 238)

Name: NF11947_low_17
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11947_low_17
NF11947_low_17
[»] chr4 (1 HSPs)
chr4 (16-238)||(30519988-30520210)
[»] chr3 (1 HSPs)
chr3 (17-238)||(35633870-35634090)
[»] chr1 (1 HSPs)
chr1 (17-238)||(42247400-42247620)
[»] chr7 (1 HSPs)
chr7 (17-238)||(48754793-48755013)
[»] chr8 (1 HSPs)
chr8 (17-238)||(45384890-45385108)


Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 30519988 - 30520210
Alignment:
Q  16 aaaatatgggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtg 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30519988 aaaatatgggtctagcataaggaccctcctagctaaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtg 30520087  T
Q  116 tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30520088 tgagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtatgtcttttgaacctagtca 30520187  T
Q  216 aagtgaaagtgcaggtcatttct 238  Q
    ||||||||||| |||||||||||    
T  30520188 aagtgaaagtgtaggtcatttct 30520210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 35633870 - 35634090
Alignment:
Q  17 aaatatgggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgt 116  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35633870 aaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaaagcaa-gtgctgttatcgtactaaagagaaaatcattatgtctcatgtgt 35633968  T
Q  117 gagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaa 216  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35633969 gagtgtgactggaaagataagccaacccaatcacaagcaccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaa 35634068  T
Q  217 agtgaaagtgcaggtcatttct 238  Q
    || |||||||||||||||||||    
T  35634069 agcgaaagtgcaggtcatttct 35634090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 42247400 - 42247620
Alignment:
Q  17 aaatatgggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgt 116  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42247400 aaatatgggtcaagcataaggaccctcctagctaaagccatttgaatcaaagcaa-gtgatgttatcgtactaaagagaaaatcattatgtctcatgtgt 42247498  T
Q  117 gagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaa 216  Q
    ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42247499 gagtgtgaccggaaagataagccaacctaatcacaagcaccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaa 42247598  T
Q  217 agtgaaagtgcaggtcatttct 238  Q
    || |||||||||||||||||||    
T  42247599 agcgaaagtgcaggtcatttct 42247620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 48755013 - 48754793
Alignment:
Q  17 aaatatgggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgt 116  Q
    ||||||||| | |||||||||||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||    
T  48755013 aaatatgggccaagcataaggaccctcccagctaaagccatttgaatcaaagcaa-gtgttgttatcgtactaaatagaaaatcattatgtctcatgtgt 48754915  T
Q  117 gagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaa 216  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  48754914 gagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtctattgaacctagtcaa 48754815  T
Q  217 agtgaaagtgcaggtcatttct 238  Q
    || |||||||||||||||||||    
T  48754814 agcgaaagtgcaggtcatttct 48754793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 45384890 - 45385108
Alignment:
Q  17 aaatatgggtctagcataaggaccctcctagataaagccatttgaatcaaagcaaagtgctgttatcgtactaaagagaaaatcattatgtctcatgtgt 116  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||    
T  45384890 aaatatgggtcaagcataaggacc-tcctagctaaagccatttgaatcaaagcaa-gtgttgttatcgtactaaagagaaaatcattatgtctcat-tgt 45384986  T
Q  117 gagtgtgactggaaagataagccaacccaatcacaagctccttctttaatgttcatgttccacaaaaggcaaatattgtgtgtcttttgaacctagtcaa 216  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  45384987 gagtgtgactcgaaagataagccaacccaatcacaagcaccttctttaatgttcatgttccacaaaaggcgaatattgtgtgtctattgaacctagtcaa 45385086  T
Q  217 agtgaaagtgcaggtcatttct 238  Q
    || ||||||||| |||||||||    
T  45385087 agcgaaagtgcatgtcatttct 45385108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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