View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11947_low_19 (Length: 211)

Name: NF11947_low_19
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11947_low_19
NF11947_low_19
[»] chr1 (2 HSPs)
chr1 (15-60)||(47052198-47052243)
chr1 (15-60)||(19658157-19658201)
[»] chr8 (1 HSPs)
chr8 (15-60)||(4708150-4708195)
[»] chr4 (1 HSPs)
chr4 (15-60)||(5743221-5743266)
[»] chr3 (4 HSPs)
chr3 (15-60)||(5735947-5735992)
chr3 (15-60)||(5773059-5773104)
chr3 (72-137)||(5736013-5736081)
chr3 (72-137)||(5773125-5773193)
[»] chr2 (4 HSPs)
chr2 (15-60)||(27560634-27560679)
chr2 (15-60)||(37457075-37457120)
chr2 (15-53)||(810344-810382)
chr2 (72-139)||(27560543-27560612)
[»] chr5 (1 HSPs)
chr5 (15-60)||(42783975-42784019)


Alignment Details
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 47052198 - 47052243
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  47052198 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 47052243  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 19658157 - 19658201
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||    
T  19658157 cagagagctaacgggagtgagaggagaaaggaaa-ggaaagttatg 19658201  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 4708150 - 4708195
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||| |||||||||||||||||||||||||||||||    
T  4708150 cagagagctaacggaagtgagaggagaatggaaagggaaagttatg 4708195  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5743221 - 5743266
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  5743221 cagagagctaacgggagtgataggagaaaggaaagggaaagttatg 5743266  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5735947 - 5735992
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  5735947 cagagagataacgggagtgagaggagaaaggaaagggaaagttatg 5735992  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 5773059 - 5773104
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||    
T  5773059 cagagagataacgggagtgagaggagaaaggaaagggaaagttatg 5773104  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 5736013 - 5736081
Alignment:
Q  72 cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt 137  Q
    |||||||| |||||||||||||||||||   ||| ||||| ||||||| ||||||||||| ||||||||    
T  5736013 cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt 5736081  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 137
Target Start/End: Original strand, 5773125 - 5773193
Alignment:
Q  72 cccacgtgagtgtctagtaagttctaca---atctattattattaatacttctcatacttgattacttt 137  Q
    |||||||| |||||||||||||||||||   ||| ||||| ||||||| ||||||||||| ||||||||    
T  5773125 cccacgtgtgtgtctagtaagttctacatatatccattatcattaataattctcatacttaattacttt 5773193  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 27560679 - 27560634
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  27560679 cagagagctaacgggagtgataggagaaaggaaagggaaagttatg 27560634  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 37457120 - 37457075
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||    
T  37457120 cagagagctaacgggagtgataggagaaaggaaagggaaagttatg 37457075  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 810344 - 810382
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaa 53  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  810344 cagagagctaacggaagtgagaggagaatggaaagggaa 810382  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 27560612 - 27560543
Alignment:
Q  72 cccacgtgagtgtctagtaagttctacaatct--attattattaatacttctcatacttgattactttct 139  Q
    |||||||| |||||||||||||||||  || |  ||||| ||||||| ||||||||||| ||||||||||    
T  27560612 cccacgtgtgtgtctagtaagttctagtatatccattatcattaataattctcatacttaattactttct 27560543  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 42784019 - 42783975
Alignment:
Q  15 cagagagctaacgggagtgagaggagaatggaaagggaaagttatg 60  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||    
T  42784019 cagagagctaacggaagtga-aggagaatggaaagggaaagttatg 42783975  T

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