View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_2 (Length: 671)
Name: NF11947_low_2
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 157; Significance: 4e-83; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 475 - 654
Target Start/End: Complemental strand, 2811696 - 2811516
Alignment:
| Q |
475 |
atcaatgttttcctccacaaatcaaatggtacagtttgattcttgatataactgcaacaacatggattctgaacaagcttttatcatatgcatgggtaca |
574 |
Q |
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| T |
2811696 |
atcaatgttttcctcctcaaatcaaatggtacagtttgattcttgatataactgcaaccacatggattctgaacaaggttttatcatatgcatgggtaca |
2811597 |
T |
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| Q |
575 |
ttctgaaaaataaaatcaatattttgtttgttcttcctt-cctctaacaagatcagcttaaaaagagtaaaatcataaagc |
654 |
Q |
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| T |
2811596 |
ttctgaaaaataaaatcaatattttgtttgttcttccttccctctaataagatcagcttaaaaagagtaaaatcataaagc |
2811516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 218 - 433
Target Start/End: Complemental strand, 2811917 - 2811695
Alignment:
| Q |
218 |
aaatagattcaaagaaattgaacactgagaagtgagaggatgagagaagctttggtgtgtaaatttataggcaaggttgtgaatgactagttg-----tg |
312 |
Q |
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| T |
2811917 |
aaatagattcaaagaaattgaacactgagaagtgagaggctgagagaagctt-ggtgtgtcaatttataggcaaggttgtgaatgactagttggtctttg |
2811819 |
T |
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| Q |
313 |
gatatttactattagcaccaccttcttttaatacaccctctcataaggtgtttgtcttttaattatta---attgaataaagttagtgtctcacacaatt |
409 |
Q |
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| T |
2811818 |
gatatttactattagcaccaccgtctattaatacaccctctcataaggtacttgtcttttaattattattaattgaataaagttagtgtctcacacaatt |
2811719 |
T |
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| Q |
410 |
actctattaagcaacatagcatat |
433 |
Q |
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| T |
2811718 |
actctattaagaaacatagcatat |
2811695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 72 - 184
Target Start/End: Complemental strand, 2812013 - 2811901
Alignment:
| Q |
72 |
tgatcatcagagacttaattaaatactaggaatcatagaacaaatccatcatattgttgcagnnnnnnnctcatcaaatgattcattcaacaacgaaaat |
171 |
Q |
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| T |
2812013 |
tgatcatcagagacttaattaaatactaggaatcatggaacaaatccatcatattgttgcagtttttttctcatcaaatgatccattccataacacaaat |
2811914 |
T |
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| Q |
172 |
agattcaaagaaa |
184 |
Q |
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| T |
2811913 |
agattcaaagaaa |
2811901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 599 - 652
Target Start/End: Complemental strand, 2814203 - 2814150
Alignment:
| Q |
599 |
tgtttgttcttccttcctctaacaagatcagcttaaaaagagtaaaatcataaa |
652 |
Q |
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| T |
2814203 |
tgtttcttcttccttcctctaacaagatcagcttaaaaagagtaaaatcttaaa |
2814150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 2806528 - 2806471
Alignment:
| Q |
72 |
tgatcatcagagacttaattaaatactaggaatcatagaacaaatccatcatattgttgcag |
133 |
Q |
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| T |
2806528 |
tgatcatcagagacttaa----atactaagaatcatggaacgaatccatcatattgttgcag |
2806471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 133
Target Start/End: Complemental strand, 8132726 - 8132683
Alignment:
| Q |
90 |
ttaaatactaggaatcatagaacaaatccatcatattgttgcag |
133 |
Q |
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| T |
8132726 |
ttaaatactaggaatcatggaacgaatccatcgtattgttgcag |
8132683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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