View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_3 (Length: 670)
Name: NF11947_low_3
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_3 |
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| [»] scaffold0118 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 19 - 654
Target Start/End: Original strand, 13715985 - 13716620
Alignment:
| Q |
19 |
tcaccgggccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaa |
118 |
Q |
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| T |
13715985 |
tcaccgggccacatgtgcttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaa |
13716084 |
T |
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| Q |
119 |
gccaaatggaagaagcaatatgatgtttgatcggagaactcgttatgaaaaatctctttctgcacataagagcccactgctcatcagaggtgatgagttt |
218 |
Q |
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| T |
13716085 |
gccaaatggaagaagcaatatgatgcttgatcggagaactcgttatgaaaaaactatttctgcacataagagcccactgctcatcagaggtgatgagttt |
13716184 |
T |
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| Q |
219 |
ccaacaaaggaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaacccaccctcaactttgggcctgcaaatattgctcctagataca |
318 |
Q |
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| T |
13716185 |
ccaacaaagaaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaacccaccctcaactttgggcctgcaaatattgctcctagataca |
13716284 |
T |
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| Q |
319 |
attcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatcaaagagataggccagacatacacatgga |
418 |
Q |
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| T |
13716285 |
atgcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatcaaagagataggccagacatacacatgga |
13716384 |
T |
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| Q |
419 |
aggagtatactagcatgcgaataaccaccgagttgacaagttgaaccctccctatgatggttactagatgacctttccaagaagccagcttcgaacagat |
518 |
Q |
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| T |
13716385 |
aggagtatactagcatgcgaataattaccgagttgacaagttgaacgctccctatgatggttactagaggacctttccaagaagccagcttcgaacagat |
13716484 |
T |
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| Q |
519 |
tctatcaacaataggctgaaaatgttgaactttaagatttcctttaaacaaaagtatccccatataagtaaaaggcatggaggcatgcttaaaaccagtg |
618 |
Q |
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| T |
13716485 |
tctatcaacaataggctgaaaatgttgaactttgggatttcctttaaacaaaagtatccccagataagtaaaaggcatggaggcatgcttaaaaccagtg |
13716584 |
T |
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| Q |
619 |
aggccagctatggtacaaagcctagaaagagggatg |
654 |
Q |
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| T |
13716585 |
aggccagatatggtacaaagcctagaaagagggatg |
13716620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 27 - 394
Target Start/End: Original strand, 36261 - 36634
Alignment:
| Q |
27 |
ccacatgtccttccaaaagagaacattctccacattccctatgttccaattagaattattcaacacaggctgaacaaaaggcttaagccgaagccaaatg |
126 |
Q |
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|||| |||||||||||||||||||||||||| ||||||| || |||||| |||||||| ||||| ||| ||||||| |||||||||| ||||||| |
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| T |
36261 |
ccacctgtccttccaaaagagaacattctccccattcccaatattccaagtagaattaactaacaccaactgcacaaaagacttaagccgaggccaaatc |
36360 |
T |
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| Q |
127 |
gaagaagcaatatgatgtttgatcggagaactcgttatgaaaaatctctttctg-cacataagagcccactgctcatcagaggtgatgagtttccaacaa |
225 |
Q |
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| T |
36361 |
gaataagtagtatgatgttggatcggagaacccgatcgtaaaaatctc-ttctgacacataatag-cctctgctcatcagaagtgataagtttccaacca |
36458 |
T |
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| Q |
226 |
aggaacaacattgcagttttattaacaatcaaaggatctcgcagtgctaa-------cccaccctcaactttgggcctgcaaatattgctcctagataca |
318 |
Q |
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| T |
36459 |
agaaacaacatcgccactttatcaacaatcaaagggtaatgcagagctaaccccccccccccccccagctttgggccaacaaagattgctcgtacagaca |
36558 |
T |
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| Q |
319 |
attcaaatcttctttgtcgaagtatctccgctccaaatgaaattagtaaacattcttctaagctgcttaatcaaag |
394 |
Q |
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| T |
36559 |
atgcaaatcttttttattgaagtatctccgctccaaataaaattagtaaacattcttctaagctgtttaatgaaag |
36634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 505 - 654
Target Start/End: Original strand, 36633 - 36782
Alignment:
| Q |
505 |
agcttcgaacagattctatcaacaataggctgaaaatgttgaactttaagatttcctttaaacaaaagtatccccatataagtaaaaggcatggaggcat |
604 |
Q |
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| T |
36633 |
agctttgaacggattctatcaacaataggctggaaatgttgaactttgggctttcctttgaacaaaggtatccccagataagtaaaaggcatggaggcat |
36732 |
T |
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| Q |
605 |
gcttaaaaccagtgaggccagctatggtacaaagcctagaaagagggatg |
654 |
Q |
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| T |
36733 |
gcttaaaaccggtgaggccagctatggcacaaagccaagaatgcgggatg |
36782 |
T |
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Back To:
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