View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_4 (Length: 643)
Name: NF11947_low_4
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 318 - 625
Target Start/End: Complemental strand, 46962182 - 46961875
Alignment:
| Q |
318 |
taaaatataacaaaagttgaggtcaaatgagcatgctgaaagaacattttgtgaaagtagcctgtcctgattttgcaaatgcaaaggtccttgttcatct |
417 |
Q |
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| T |
46962182 |
taaaatataacaaaagttgaggtcaaatgagcatgctgaaagaacattttgtgaaagtagcctgtcctgattgtgcaaatgcaaaggtccttgttcatct |
46962083 |
T |
|
| Q |
418 |
acaccaactgtcacaagtacatatataccatcaattgctcctacacacaaaccttaaaatatgaatataatctacgatcttcagagattgctgaaggaac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46962082 |
acaccaactgtcacaagtacatatataccatcaattgctcctacacacaaaccttaaaatatgaatataatctacgatcttcagagattgctgaaggaac |
46961983 |
T |
|
| Q |
518 |
atcagagctaggaggctgaaaataatccctggaagtaaacattattgcattcaaaacattgtttgtgtgatgactaatagtttcaccagactgatgaaat |
617 |
Q |
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| T |
46961982 |
attagagctaggaggctgaaaataatccctggaagtaaacattattgcattcaaaacattgtttgtgtgatgactaatagtttcaccagactgatgaaat |
46961883 |
T |
|
| Q |
618 |
aattcttg |
625 |
Q |
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|||||||| |
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| T |
46961882 |
aattcttg |
46961875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 46962526 - 46962210
Alignment:
| Q |
1 |
ttaacagtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggatatatttccacctct |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46962526 |
ttaactgtgaagcaagtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggatatatttccacctct |
46962427 |
T |
|
| Q |
101 |
gatgtggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctccacgtgattgaaagtgccccgtcg |
200 |
Q |
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| T |
46962426 |
gatgtggtagtgattcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctccatgtgattgaaagtgccccgtcg |
46962327 |
T |
|
| Q |
201 |
gggatatggaacagcgaaacctggcacattcggatgcttgttttctaccgggtagtatttaccttcagggacctgcagcctatacctcctcctagtgatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||| |
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| T |
46962326 |
gggatatggaacagcgaaacctggcacattcggatgcttgttttctaccgggtagtatttaccttcaggtacctgcagcctata---cctcatagtaatt |
46962230 |
T |
|
| Q |
301 |
gctgaattagaaactggtaa |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
46962229 |
gctgaattagaaactggtaa |
46962210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 5e-27; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 318 - 464
Target Start/End: Complemental strand, 25183634 - 25183494
Alignment:
| Q |
318 |
taaaatataacaaaagttgaggtcaaatgagcatgctgaaagaacattttgtgaaagtagcctgtcctgattttgcaaatgcaaaggtccttgttcatct |
417 |
Q |
| |
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||||| ||||||||| ||||||||||||||||| |||| ||||| ||||||||||||| || ||||| ||| || | ||||||||||| |||||| |
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| T |
25183634 |
taaaacataacaaaacttgaggtcaaatgagcaagctgcgagaacgttttgtgaaagtaacccgtccttatt--gc----ggaaaggtccttgctcatct |
25183541 |
T |
|
| Q |
418 |
acaccaactgtcacaagtacatatataccatcaattgctcctacaca |
464 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||| ||||| |
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| T |
25183540 |
acaccaacggtcacaggtacatatataccatcaattgctcccacaca |
25183494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 25184986 - 25184825
Alignment:
| Q |
15 |
agtgcaatttcttgagcctttaaaactaagaccctgatactggtttttgggttccaccattcgattttggatatatttccacctctgatgt-ggtagtga |
113 |
Q |
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||||||||||||| ||| | |||||||||||||||||||||||||| |||| || |||||||| | |||| || |||||||||| || || ||||| |
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| T |
25184986 |
agtgcaatttcttcagcatc-aaaactaagaccctgatactggtttt-gggtctcaacattcgatgtcggatctacttccacctctattggaggcagtga |
25184889 |
T |
|
| Q |
114 |
ttcctccatggtaaatgatgcatcattttcacacatcttaaaaatccaaccatacggtttctcc |
177 |
Q |
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||| ||||| || ||||||||||| |||||| ||||||||||||||||| ||| ||||||||| |
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| T |
25184888 |
ttcatccattgtcaatgatgcatccttttcatacatcttaaaaatccaatcatctggtttctcc |
25184825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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