View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11947_low_8 (Length: 434)
Name: NF11947_low_8
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0118 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 13715583 - 13716005
Alignment:
| Q |
10 |
cagagaccaaaatacaccctcttattcgtaactggtcattagttagaagcttatgatgagccaatctccaaacaaatgaaggcccgannnnnnnnnnnnn |
109 |
Q |
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| T |
13715583 |
cagagaccaaaatacaccctcttattcgtaactggtcatcagttagaagcttttgatgagccaatctttaaacaaatgaaggcccgagtgtgtgtgtgtg |
13715682 |
T |
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| Q |
110 |
nnnatgtggggggtggggacaaaggcatttcaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttggacaaatcc |
209 |
Q |
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| T |
13715683 |
t--atgtggggggtggggacaaaggcattccaaataaacttgcaccaactcaacttgattcgtattcagaaaatcataagctaacttgttagacaaatcc |
13715780 |
T |
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| Q |
210 |
ccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaa |
309 |
Q |
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| T |
13715781 |
ccatccatagagtgaagccaatgcaaacagtcattttgaggttcaatgcaaagagtggtattttgtatcagcaccgtcaaagtaggatatttagggctaa |
13715880 |
T |
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| Q |
310 |
tgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaa |
409 |
Q |
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| T |
13715881 |
tgtatgagggaatctgccattgttggtgcacgatgtaatatgacaccttcatgttcagctaagcatgcaaatgagtaggaatgcttagagacttcaccaa |
13715980 |
T |
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| Q |
410 |
tggctcaccgggccacatgtccttc |
434 |
Q |
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| T |
13715981 |
tggctcaccgggccacatgtgcttc |
13716005 |
T |
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Target: scaffold0118 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 260 - 418
Target Start/End: Original strand, 36099 - 36257
Alignment:
| Q |
260 |
aagagtcgtattttgtatcagcaccgtcaaagtaggatatttacggctaatgtatgagggaatctgccattgttggtgcacaatgtaatatgacaccttc |
359 |
Q |
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| T |
36099 |
aagagtggtattttgtatctgaaccgtcaaggtaggatatttagaactaatgtaggtgggaatccgccattgatggtgcagaatgtaatctgacaccttc |
36198 |
T |
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| Q |
360 |
atgttcagctaagcatgcaaatgagtaggaatgcttagagactgcaccaatggctcacc |
418 |
Q |
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| T |
36199 |
atgtccagctgagcatgaaaatgtgaaggaatgctgagagactgcaccaacggctcacc |
36257 |
T |
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