View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11947_low_9 (Length: 401)
Name: NF11947_low_9
Description: NF11947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11947_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 383
Target Start/End: Complemental strand, 4143358 - 4142994
Alignment:
| Q |
20 |
aataggaacattcagaaccctgccatctagtgttgtgagacgaacagtgtaacctgttaaagcttctgcaagtgatatcttctgtgttgcaaccaaatca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4143358 |
aataggaacattcagaaccctgccatctagtgttgtgagacgaacagtgtaacctgttaaagcttctgcaagtgatatcttctgtgttgcaaccaaatca |
4143259 |
T |
|
| Q |
120 |
ttgccatctcttgtaaatacgccatgtggtttctcatcaataacaaatataagatctgctggtatcacatttggttgctcatttcctttctcagggaatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4143258 |
ttgccatctcttgtaaatacgccatgtggtttctcatcaataacaaatataagatctgctggtatcacatttggttgctcatttcctttctcagggaatg |
4143159 |
T |
|
| Q |
220 |
tgatttttgtcccctttttccaacctggtttcacttcaattgttaagatttcctctactggcatagttttcctgcaaagtgat-aaccaccagacaaatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
4143158 |
tgatttttgtcccctttttccaacctggtttcacttcaattgttaagatttcctccactggcatagttttcctgcaaagagataaaccaccagacaaatt |
4143059 |
T |
|
| Q |
319 |
taatcaaaccagcaaaaaattcagccaaaactggaccttatttcctaaacataagactcattgat |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4143058 |
taatcaaaccagcaaaaaattcagccaaaactggaccttatttcctaaacataagactcattgat |
4142994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 82 - 297
Target Start/End: Complemental strand, 4147390 - 4147175
Alignment:
| Q |
82 |
cttctgcaagtgatatcttctgtgttgcaaccaaatcattgccatctcttgtaaatacgccatgtggtttctcatcaataacaaatataagatctgctgg |
181 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||| || | |||||||||||| || |||||||| ||||||||||||| || |||||| | |
|
|
| T |
4147390 |
cttctgcaagtaatatcttttgtgtcataaccaaatcattaccttgtcttgtaaatacattgtgaggtttctcgtcaataacaaatacaatatctgcagc |
4147291 |
T |
|
| Q |
182 |
tatcacatttggttgctcatttcctttctcagggaatgtgatttttgtcccctttttccaacctggtttcacttcaattgttaagatttcctctactggc |
281 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| ||||||| | ||||||||||| |||||||| || || |
|
|
| T |
4147290 |
gatgacatttggttgctcatttcctttctccgggaaagtgatttttgttccctttttccagcctggttggatttcaattgttagtatttcctccacaggt |
4147191 |
T |
|
| Q |
282 |
atagttttcctgcaaa |
297 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
4147190 |
acagttttgctgcaaa |
4147175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 38862022 - 38861939
Alignment:
| Q |
188 |
atttggttgctcatttcctttctcagggaatgtgatttttgtcccctttttccaacctggtttcacttcaattgttaagatttc |
271 |
Q |
| |
|
|||||| || |||||||| ||||| ||||| ||||| ||||||||||| ||||| || ||||| || |||||||| |||||||| |
|
|
| T |
38862022 |
atttggatgttcatttcccttctcggggaaagtgatctttgtccccttcttccatccaggtttgacatcaattgtcaagatttc |
38861939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University