View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11948_high_1 (Length: 900)

Name: NF11948_high_1
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11948_high_1
NF11948_high_1
[»] chr6 (21 HSPs)
chr6 (491-885)||(20654118-20654515)
chr6 (491-885)||(12038428-12038822)
chr6 (1-256)||(12049820-12050075)
chr6 (1-254)||(12052303-12052564)
chr6 (1-146)||(20633802-20633946)
chr6 (1-233)||(20633375-20633615)
chr6 (414-498)||(12049578-12049662)
chr6 (136-254)||(20652279-20652397)
chr6 (1-244)||(12051477-12051713)
chr6 (138-254)||(20640131-20640247)
chr6 (134-251)||(20653335-20653451)
chr6 (138-250)||(12051322-12051434)
chr6 (143-220)||(20652660-20652737)
chr6 (142-233)||(12052175-12052266)
chr6 (143-251)||(20652435-20652537)
chr6 (142-199)||(20640732-20640789)
chr6 (134-219)||(20653043-20653127)
chr6 (143-199)||(20640509-20640565)
chr6 (5-120)||(20653196-20653312)
chr6 (204-254)||(20653256-20653306)
chr6 (134-219)||(20650909-20650994)
[»] chr4 (11 HSPs)
chr4 (491-636)||(19336686-19336831)
chr4 (704-815)||(19340977-19341092)
chr4 (138-250)||(12999456-12999568)
chr4 (644-815)||(19336466-19336641)
chr4 (143-250)||(12999170-12999277)
chr4 (143-250)||(12999754-12999861)
chr4 (143-254)||(12999601-12999712)
chr4 (142-215)||(12999056-12999129)
chr4 (141-186)||(12998936-12998981)
chr4 (491-593)||(1853772-1853874)
chr4 (491-593)||(36650221-36650323)
[»] chr3 (12 HSPs)
chr3 (491-636)||(34013839-34013984)
chr3 (491-636)||(4185622-4185767)
chr3 (644-772)||(4185434-4185563)
chr3 (644-778)||(4188580-4188715)
chr3 (727-815)||(4185232-4185324)
chr3 (719-806)||(34014083-34014174)
chr3 (704-778)||(34011151-34011226)
chr3 (143-250)||(9098811-9098918)
chr3 (662-705)||(20632771-20632814)
chr3 (644-683)||(34014029-34014068)
chr3 (70-120)||(9098658-9098707)
chr3 (59-120)||(9098367-9098427)
[»] chr8 (6 HSPs)
chr8 (491-643)||(3378529-3378681)
chr8 (491-636)||(38614114-38614259)
chr8 (644-815)||(3378719-3378894)
chr8 (644-815)||(38618296-38618471)
chr8 (644-815)||(38613894-38614069)
chr8 (142-251)||(1881780-1881889)
[»] scaffold0210 (1 HSPs)
scaffold0210 (648-807)||(9694-9857)
[»] scaffold0113 (2 HSPs)
scaffold0113 (143-250)||(48033-48140)
scaffold0113 (142-216)||(47918-47992)
[»] scaffold0173 (5 HSPs)
scaffold0173 (417-498)||(31605-31686)
scaffold0173 (5-185)||(34548-34738)
scaffold0173 (147-220)||(34234-34307)
scaffold0173 (13-120)||(34344-34452)
scaffold0173 (166-256)||(31851-31941)
[»] chr2 (3 HSPs)
chr2 (160-254)||(24513474-24513568)
chr2 (148-250)||(24512972-24513074)
chr2 (70-120)||(24513701-24513750)
[»] scaffold0036 (2 HSPs)
scaffold0036 (138-187)||(110474-110523)
scaffold0036 (204-252)||(110558-110606)
[»] chr1 (1 HSPs)
chr1 (494-591)||(7324312-7324409)
[»] chr5 (3 HSPs)
chr5 (662-705)||(21541914-21541957)
chr5 (501-604)||(28552920-28553023)
chr5 (501-604)||(28560887-28560990)
[»] scaffold0169 (1 HSPs)
scaffold0169 (491-593)||(22305-22407)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 491 - 885
Target Start/End: Original strand, 20654118 - 20654515
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20654118 catattgagttggatattcatttcgttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 20654217  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcctgaacattatcaattatttttattgtatattcattaggcattattatttgacttg 690  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  20654218 caactggtcttcccttgatattgttccaagatttccgtgacagcctaaacattatcaattatgtttattgtatattcattagacattattatttgacttg 20654317  T
Q  691 tcaaatatgtaattatattgaataggcattattgaatattcattaggcattattagtttctatattagaatcagaaacaattgtatatgtataatt---g 787  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  20654318 tcaaatatgtaattatattgaataggcattattgaatattcattaggcattattagtttctatattagaatcagaaacaattgtatatgtataattctca 20654417  T
Q  788 tcatcaattataatcagggaattacattcttacagggttctctgcgatgattatccctcaattctcatcttagggtttgtggtttcaatgaatatttt 885  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  20654418 tcatcaattataatcagggaattacattcttacagggttttctgcgatgattatccctcaattctcatcttagggtttgtggtttcagttaatatttt 20654515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 491 - 885
Target Start/End: Complemental strand, 12038822 - 12038428
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12038822 catattgagttggatattcatttcgttcgcgaaaaggtggttcgtggccaaatccgagttctgcatgtaccatcacgatatcaaattgcagatattttca 12038723  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcctgaacattatcaattatttttattgtatattcattaggcattattatttgacttg 690  Q
    ||||  ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  12038722 caacaagtcttcccttgatattgttccaagatttccgtgacagcctcaacattatcaattatgtttattgtatattcattaggccttattatttgacttg 12038623  T
Q  691 tcaaatatgtaattatattgaataggcattattgaatattcattaggcattattagtttctatattagaatcagaaacaattgtatatgtataattgtca 790  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  12038622 tcaaatatgtaattatattgaataggcattattgaatattcattaggcattattagtttctatattagaatcagaaacaattgtatatttataattctca 12038523  T
Q  791 tcaattataatcagggaattacattcttacagggttctctgcgatgattatccctcaattctcatcttagggtttgtggtttcaatgaatatttt 885  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12038522 tcaattatgatcagggaattacattcttacagggttctctgcgatgattatccctcaattcgcatcttagggtttgtggtttcaatgaatatttt 12038428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 12050075 - 12049820
Alignment:
Q  1 tttaaccgaatacaaaaccaaataggtacccataatgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaa 100  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||||||||||| || ||| | |||||||||||||||||| ||||||||||||||||     
T  12050075 tttaaccgaatacaaaaccaaataggttcacatcatgttttaaatcaaaggacacgctcaatcatcgcatttatcaaacttcagaaccatataggctaac 12049976  T
Q  101 atcacgttttcgcgacaaggcaatactatattaaccaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagttt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12049975 atcacgttttcgcgacaaggcaatactatattaaccaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaagagttt 12049876  T
Q  201 aaacttcctatttatcaaacaagtaaccatataagctaaaatctcatttttgcgcc 256  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  12049875 aaacttccaatttatcaaacaagtaaccatataagctaaaatctcattttcgcgcc 12049820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 12052564 - 12052303
Alignment:
Q  1 tttaaccgaatacaaaaccaaataggtacccataatgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaa 100  Q
    |||||||||||||||| |||||||||| | ||| |||||||||||||  ||||| |  |||||||| |||||||| ||||| | ||||||||||||||||    
T  12052564 tttaaccgaatacaaa-ccaaataggttcacatcatgttttaaatcatgggacacgttcaaccttcccatttatctaactttgtaaccatataggctaaa 12052466  T
Q  101 atcacgttttcgcgacaagg-------caatac--tatattaaccaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaag 191  Q
    ||||||||||||||||||||       ||||||  |||||| ||| |||||||||||||||||||||||||||  ||||||||||||||||| ||||| |    
T  12052465 atcacgttttcgcgacaagggtcatctcaatactttatatttaccgaatttaaaaccaaataggttcaaatatcttgttacgcatcaagggatatcgagg 12052366  T
Q  192 gaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaatctcatttttgcg 254  Q
    || |||   || |||| ||||||||||||  ||| ||| ||||||||||||||| | ||||||    
T  12052365 gacaaggccaaccttcatatttatcaaacttgtagccacataagctaaaatctcgtctttgcg 12052303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 20633802 - 20633946
Alignment:
Q  1 tttaaccgaatacaaaaccaaataggtacccataatgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaa 100  Q
    |||||||||||||||| |||||||||| | ||| |||||||||||||  ||||| |  |||||||| |||||||| ||||| | ||||||||||||||||    
T  20633802 tttaaccgaatacaaa-ccaaataggttcacatcatgttttaaatcacgggacacgttcaaccttcccatttatctaactttgtaaccatataggctaaa 20633900  T
Q  101 atcacgttttcgcgacaaggcaatactatattaaccaaatttaaaa 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20633901 atcacgttttcgcgacaaggcaatactatattaaccaaatttaaaa 20633946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 20633375 - 20633615
Alignment:
Q  1 tttaaccgaatacaaaaccaaataggtacccataatgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaa 100  Q
    |||||| ||||||||| |||||||||| | ||| |||||||||||||   ||||||  |||||||| |||||||| ||||| | ||||||||||||||||    
T  20633375 tttaacagaatacaaa-ccaaataggttcacatcatgttttaaatcacgagacatgttcaaccttcccatttatctaactttgtaaccatataggctaaa 20633473  T
Q  101 atcacgttttcgcgacaagg-------caatac--tatattaaccaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaag 191  Q
    ||||||||||||||||||||       ||||||  |||||| ||| |||||||||||||||||||||||||||  |||||| |||||| | ||||||| |    
T  20633474 atcacgttttcgcgacaagggtcatcccaatactttatatttaccgaatttaaaaccaaataggttcaaatatcttgttactcatcaaagaacatcgagg 20633573  T
Q  192 gaaaagtttaaacttcctatttatcaaacaagtaaccatata 233  Q
    || || || || |||| |||||||||||| | ||||||||||    
T  20633574 gacaaattcaaccttcatatttatcaaactattaaccatata 20633615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 414 - 498
Target Start/End: Complemental strand, 12049662 - 12049578
Alignment:
Q  414 gatgaataaagagagatgttgcggtgattacagaaattaaatttacaagagttgcacgactaaccttgaaaatactccatattga 498  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  12049662 gatgaataaagagagatgttgcggtgattacagaaattaaatttacaagagttgcacgactaaccttgaaaagactgcatattga 12049578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 20652279 - 20652397
Alignment:
Q  136 caaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataag 235  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| || || || |||| |||||||||||||  |||||||||| |    
T  20652279 caaatttaaaaccaaataggttcaaatattatgttacacatcaaaggacatcgagggacaaattcaaccttcatatttatcaaacatctaaccatatagg 20652378  T
Q  236 ctaaaatctcatttttgcg 254  Q
    |||||||||||||||||||    
T  20652379 ctaaaatctcatttttgcg 20652397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 12051713 - 12051477
Alignment:
Q  1 tttaaccgaatacaaaaccaaataggtacccataatgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaa 100  Q
    |||||| ||||||||| |||||||||| | ||| |||||||||||||  ||||| |  |||||||| |||||||| ||||| | ||||||||||||||||    
T  12051713 tttaacagaatacaaa-ccaaataggttcacatcatgttttaaatcatgggacacgttcaaccttcccatttatctaactttgtaaccatataggctaaa 12051615  T
Q  101 atcacgttttcgcgacaagg--caatactatattaaccaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagt 198  Q
    ||||||||||||||||||||  ||   | ||        | |||||||||||||||||||||||||  |||||| |||||| | ||||||| ||| || |    
T  12051614 atcacgttttcgcgacaagggtcatcccaat--------actttaaaaccaaataggttcaaatatcttgttactcatcaaagaacatcgagggacaaat 12051523  T
Q  199 ttaaacttcctatttatcaaacaagtaaccatataagctaaaatct 244  Q
    | || |||| ||||||||||||  ||||||||||||||||||||||    
T  12051522 tgaaccttcatatttatcaaacttgtaaccatataagctaaaatct 12051477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 138 - 254
Target Start/End: Original strand, 20640131 - 20640247
Alignment:
Q  138 aatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagct 237  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| || || || |||| |||||||||||||  |||||||||| |||    
T  20640131 aatttaaaaccaaataggttcaaatattatgttacacatcaaaggacatcgaaggacaaattcaaccttcatatttatcaaacatctaaccatataggct 20640230  T
Q  238 aaaatctcatttttgcg 254  Q
    || ||||||||||||||    
T  20640231 aatatctcatttttgcg 20640247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 134 - 251
Target Start/End: Original strand, 20653335 - 20653451
Alignment:
Q  134 accaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatata 233  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| || || ||||||| || |||||||||   ||||||||||    
T  20653335 accaaatttaaaaccaaataggt-caaatattatgttacgcatcaaaggacatcgagggacaaattcaaacttcatacttatcaaacttctaaccatata 20653433  T
Q  234 agctaaaatctcattttt 251  Q
      ||| ||||||||||||    
T  20653434 gactacaatctcattttt 20653451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 12051434 - 12051322
Alignment:
Q  138 aatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagct 237  Q
    |||||||||||||||||||| ||| | ||||||||||| ||| ||||||||| |||||| || || |||| || |||||||||   |||||||| | |||    
T  12051434 aatttaaaaccaaataggttaaaaaaatatgttacgcaacaaaggacatcgagggaaaaattcaaccttcatagttatcaaacttttaaccatacaggct 12051335  T
Q  238 aaaatctcatttt 250  Q
    | |||||||||||    
T  12051334 acaatctcatttt 12051322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 220
Target Start/End: Original strand, 20652660 - 20652737
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaac 220  Q
    |||| |||||||||||| |||||||||| |||||||||||||||| |  || ||||| |||||||| |||||||||||    
T  20652660 aaaaacaaataggttcacatattatgtttcgcatcaagggacatcaagagacaagttcaaacttccgatttatcaaac 20652737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 12052266 - 12052175
Alignment:
Q  142 taaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatata 233  Q
    ||||||| || |||||||||||||||||||| |||||  ||||||||| ||| || || || |||| |||||||||||| | ||||||||||    
T  12052266 taaaaccgaagaggttcaaatattatgttactcatcataggacatcgagggacaaattcaaccttcatatttatcaaactattaaccatata 12052175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 251
Target Start/End: Original strand, 20652435 - 20652537
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaat 242  Q
    ||||||||||||||||| |||| || || |||||||||||||||||| ||| ||||| || |      |||||||||||   ||||||||| ||||||||    
T  20652435 aaaaccaaataggttcacatatcatatttcgcatcaagggacatcgagggacaagttcaacc------tttatcaaacatcaaaccatataggctaaaat 20652528  T
Q  243 ctcattttt 251  Q
    |||||||||    
T  20652529 ctcattttt 20652537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 20640732 - 20640789
Alignment:
Q  142 taaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtt 199  Q
    |||||||||||||||||| |||| || || |||||||||||||||||| ||| |||||    
T  20640732 taaaaccaaataggttcacatatcatatttcgcatcaagggacatcgagggacaagtt 20640789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 20653043 - 20653127
Alignment:
Q  134 accaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaa 219  Q
    |||||||||||||||||||||||||||||| ||||||    ||||| ||||||| | ||| ||||| || |||| |||||||||||    
T  20653043 accaaatttaaaaccaaataggttcaaata-tatgttttcaatcaaaggacatcaagggacaagttcaaccttcatatttatcaaa 20653127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 20640509 - 20640565
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtt 199  Q
    ||||||||||||||||| |||| || || |||||||||||||||||| ||| |||||    
T  20640509 aaaaccaaataggttcacatatcatatttcgcatcaagggacatcgagggacaagtt 20640565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 20653196 - 20653312
Alignment:
Q  5 accgaatacaaaaccaaataggtacccata--atgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaaat 102  Q
    ||||||||| ||||||||||||| | ||||  ||||||   || || |||||||| ||||||||  ||||||||||||| | ||||||||| |||||||     
T  20653196 accgaatacgaaaccaaataggttcacatatcatgtttcgcataaagggacatgctcaaccttcatatttatcaaactt-gtaaccatataagctaaaac 20653294  T
Q  103 cacgttttcgcgacaagg 120  Q
    | |||||| |||| ||||    
T  20653295 ctcgtttttgcgataagg 20653312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 20653256 - 20653306
Alignment:
Q  204 cttcctatttatcaaacaagtaaccatataagctaaaatctcatttttgcg 254  Q
    |||| ||||||||||||  ||||||||||||||||||| ||| ||||||||    
T  20653256 cttcatatttatcaaacttgtaaccatataagctaaaacctcgtttttgcg 20653306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 219
Target Start/End: Original strand, 20650909 - 20650994
Alignment:
Q  134 accaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaa 219  Q
    |||||||||||||||| |||||||||||||| |||||    ||||| ||||||| | ||| || || || |||| |||||||||||    
T  20650909 accaaatttaaaaccagataggttcaaatatcatgttttcaatcaaaggacatcaagggacaacttcaaccttcatatttatcaaa 20650994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 3e-50; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 491 - 636
Target Start/End: Complemental strand, 19336831 - 19336686
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||||||| |||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  19336831 catattgagatggatattcattttgttcgcgaaaaggtgtctcgtggccaagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttca 19336732  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcct 636  Q
    |||  |||||||||| |||||| |||||||||||||||||||||||    
T  19336731 caaaaggtcttcccttgatattattccaagatttccgtgacagcct 19336686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 704 - 815
Target Start/End: Complemental strand, 19341092 - 19340977
Alignment:
Q  704 tatattgaataggcattattgaatattcattaggcatt-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattata 799  Q
    |||||||| |||| ||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| |||    
T  19341092 tatattgattaggtattattgtatattcattaggcattcattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataata 19340993  T
Q  800 atcagggaattacatt 815  Q
    ||||||| ||||||||    
T  19340992 atcaggggattacatt 19340977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 138 - 250
Target Start/End: Complemental strand, 12999568 - 12999456
Alignment:
Q  138 aatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagct 237  Q
    ||||||||||||||||| ||||||||| ||||| |||||||||||||||| | ||| ||||| || |||| || |||| ||||  ||||||||||| |||    
T  12999568 aatttaaaaccaaatagtttcaaatatcatgtttcgcatcaagggacatcaagggacaagttgaaccttcatacttattaaacttgtaaccatataggct 12999469  T
Q  238 aaaatctcatttt 250  Q
    |||||||||||||    
T  12999468 aaaatctcatttt 12999456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 644 - 815
Target Start/End: Complemental strand, 19336641 - 19336466
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatttgacttgtcaa--atatgtaat-tatattgaataggcattattgaatattcattaggcat 740  Q
    ||||||||| ||||||||||||||||||| ||||| |||| || |   |||  |||| || | |||||||| |||| ||||||| ||||| ||||||| |    
T  19336641 atcaattatgtttattgtatattcattagacattactattagaat---caattatatttattgtatattgattaggtattattgtatatttattaggcct 19336545  T
Q  741 t-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcagggaattacatt 815  Q
    | |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| |||||||||| ||||||||    
T  19336544 tcattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataataatcaggggattacatt 19336466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 12999277 - 12999170
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaat 242  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||| ||| |||||  | |||| ||||||||||||  |||||||| || ||||||||    
T  12999277 aaaaccaaataggttcacatatcatgtttcgcatcaagggacatcgagggacaagttctaccttcatatttatcaaacttgtaaccatgtaggctaaaat 12999178  T
Q  243 ctcatttt 250  Q
     |||||||    
T  12999177 atcatttt 12999170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 12999861 - 12999754
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaat 242  Q
    |||| |||||||||||| |||| ||||| |||||| ||||||||||| ||| ||||| || |||| ||||||||||||  |||||||| || ||||||||    
T  12999861 aaaatcaaataggttcagatatcatgtttcgcatctagggacatcgagggacaagttcaaccttcatatttatcaaacttgtaaccatgtaggctaaaat 12999762  T
Q  243 ctcatttt 250  Q
    ||||||||    
T  12999761 ctcatttt 12999754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 254
Target Start/End: Complemental strand, 12999712 - 12999601
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaat 242  Q
    ||||||||| ||||||| |||| ||||| |||||||||||||||| | ||| ||||| |||||||| ||||||  |||  | || |||||| |  |||||    
T  12999712 aaaaccaaagaggttcacatatcatgtttcgcatcaagggacatccagggacaagttcaaacttcccatttattcaacttgcaagcatataggacaaaat 12999613  T
Q  243 ctcatttttgcg 254  Q
    ||||||||||||    
T  12999612 ctcatttttgcg 12999601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 12999129 - 12999056
Alignment:
Q  142 taaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttat 215  Q
    |||||||||| ||||||| |||| ||||| |||||||||||||||| | ||| ||||| |||||||| ||||||    
T  12999129 taaaaccaaagaggttcacatatcatgtttcgcatcaagggacatccagggacaagttcaaacttcccatttat 12999056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 12998981 - 12998936
Alignment:
Q  141 ttaaaaccaaataggttcaaatattatgttacgcatcaagggacat 186  Q
    |||||||||||||| ||||||||| ||||| |||||||||||||||    
T  12998981 ttaaaaccaaatagtttcaaatatcatgtttcgcatcaagggacat 12998936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 1853772 - 1853874
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||| ||| |||||||||||||  |||||||||| || ||||||||  || | ||||| || ||||| || ||||| || || |||||||||||||| |    
T  1853772 catatcgagatggatattcattttgttcgcgaaaaagttgctcgtggggaagttcgagtcctacacgtcccctcacgctaccagattgcagatattttta 1853871  T
Q  591 caa 593  Q
    |||    
T  1853872 caa 1853874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 36650221 - 36650323
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||| ||| |||||||||||||  |||||||||| || ||||||||  || | ||||| || ||||| || ||||| || || |||||||||||||| |    
T  36650221 catatcgagatggatattcattttgttcgcgaaaaagttgctcgtggggaagttcgagtcctacacgtcccctcacgctaccagattgcagatattttta 36650320  T
Q  591 caa 593  Q
    |||    
T  36650321 caa 36650323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 3e-50; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 491 - 636
Target Start/End: Original strand, 34013839 - 34013984
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||||||| |||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  34013839 catattgagatggatattcattttgttcgcgaaaaggtgtctcgtggccaagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttca 34013938  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcct 636  Q
    |||  |||||||||| |||||| |||||||||||||||||||||||    
T  34013939 caaaaggtcttcccttgatattattccaagatttccgtgacagcct 34013984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 491 - 636
Target Start/End: Complemental strand, 4185767 - 4185622
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||||||| |||||||||||||  || ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||    
T  4185767 catattgagatggatattcattttgtttgcgaaaaggtgtctcgtggccaagtctgagttctgcacgtaccatcacgatatcaaattgcagatgttttca 4185668  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcct 636  Q
    |||  |||||||||| |||||| ||||||||||| |||||||||||    
T  4185667 caaaaggtcttcccttgatattattccaagattttcgtgacagcct 4185622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 644 - 772
Target Start/End: Complemental strand, 4185563 - 4185434
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatttgacttgtcaaatatgtaattatattgaataggcattattgaatattcattaggca-tta 742  Q
    ||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||| |||||||| |||||||||| ||| |||    
T  4185563 atcaattatgtttattgtatattcattagacattactattttacttgtcaaatatgtaattatattgattagacattattgtatattcattatgcattta 4185464  T
Q  743 ttagtttctatattagaatcagaaacaatt 772  Q
    ||||||||||||| ||||||||||||||||    
T  4185463 ttagtttctatatcagaatcagaaacaatt 4185434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 644 - 778
Target Start/End: Complemental strand, 4188715 - 4188580
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatttgacttgtcaaatatgtaattatattgaataggcattattgaatattcattaggca-tta 742  Q
    |||| |||| ||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||||||| ||| |||| ||| |||||||||||||| |||    
T  4188715 atcagttatatttattgaatatttattagacattactattttacttgtcaaatatgtaattatattgattagacatttttgtatattcattaggcattta 4188616  T
Q  743 ttagtttctatattagaatcagaaacaattgtatat 778  Q
    ||||||||||||| ||||||||||| ||||||||||    
T  4188615 ttagtttctatatcagaatcagaaataattgtatat 4188580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 727 - 815
Target Start/End: Complemental strand, 4185324 - 4185232
Alignment:
Q  727 tattcattaggcatt-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcagggaattacatt 815  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| |||||||||| ||||||||    
T  4185324 tattcattatgcatttattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataataatcaggggattacatt 4185232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 719 - 806
Target Start/End: Original strand, 34014083 - 34014174
Alignment:
Q  719 ttattgaatattcattaggcatt-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcaggg 806  Q
    |||||| ||||| |||| ||||| |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| ||||||||||    
T  34014083 ttattgtatattgattaagcattcattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataataatcaggg 34014174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 704 - 778
Target Start/End: Original strand, 34011151 - 34011226
Alignment:
Q  704 tatattgaataggcattattgaatattcattaggcatt-attagtttctatattagaatcagaaacaattgtatat 778  Q
    |||||| | ||| |||||||| |||||||||||| ||| |||||||||||||| |||||||||||||||| |||||    
T  34011151 tatatttattagacattattgtatattcattaggtattcattagtttctatatcagaatcagaaacaattatatat 34011226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 9098918 - 9098811
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaat 242  Q
    ||||||||||||||||| |||| ||||| | ||||||| |||||| | ||| ||||| ||| ||||||  ||||||||  ||| |||||||  | |||||    
T  9098918 aaaaccaaataggttcacatatcatgtttcacatcaagcgacatcaagggacaagttcaaatttcctaactatcaaacttgtagccatatagaccaaaat 9098819  T
Q  243 ctcatttt 250  Q
    ||||||||    
T  9098818 ctcatttt 9098811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 662 - 705
Target Start/End: Complemental strand, 20632814 - 20632771
Alignment:
Q  662 atattcattaggcattattatttgacttgtcaaatatgtaatta 705  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  20632814 atattcattagacattattagttgacttgtcaaatatgtaatta 20632771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 683
Target Start/End: Original strand, 34014029 - 34014068
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatt 683  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  34014029 atcaattatgtttattgtatattcattaggcattactatt 34014068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 9098707 - 9098658
Alignment:
Q  70 tttatcaaacttcggaaccatataggctaaaatcacgttttcgcgacaagg 120  Q
    |||||||||||||| ||||||||||||||||||| | |||| |||||||||    
T  9098707 tttatcaaacttcg-aaccatataggctaaaatctcatttttgcgacaagg 9098658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 9098427 - 9098367
Alignment:
Q  59 caaccttcgcatttatcaaacttcggaaccatataggctaaaatcacgttttcgcgacaagg 120  Q
    ||||||||  |||||||||| || | ||||||||||||||||||| |||||| |||||||||    
T  9098427 caaccttcatatttatcaaaatt-gtaaccatataggctaaaatctcgtttttgcgacaagg 9098367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 1e-49; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 491 - 643
Target Start/End: Original strand, 3378529 - 3378681
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||||||| |||||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  3378529 catattgagatggatattcattttgttcgcgaaaaggtgtctcgtggccaagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttca 3378628  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcctgaacatt 643  Q
    |||  |||||||||| |||||| |||||||||||||||||||| || ||||||    
T  3378629 caaaaggtcttcccttgatattattccaagatttccgtgacagactcaacatt 3378681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 491 - 636
Target Start/End: Complemental strand, 38614259 - 38614114
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||||||| || ||||||||||  |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  38614259 catattgagatgaatattcattttgttcgcgaaaaggtgtctcgtggccaagtccgagttctgcacgtaccatcacgatatcaaattgcagacgttttca 38614160  T
Q  591 caactggtcttccctcgatattgttccaagatttccgtgacagcct 636  Q
    |||  |||||||| | |||||| |||||||||||||||||||||||    
T  38614159 caaaaggtcttcctttgatattattccaagatttccgtgacagcct 38614114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 644 - 815
Target Start/End: Original strand, 3378719 - 3378894
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatttgacttgtcaaatatgta-att--atattgaataggcattattgaatattcattaggcat 740  Q
    ||||||||| ||||||||||||||||||||||||| |||| || |   ||| |||||  |||  ||||||| |||||||||||| |||||||||||||||    
T  3378719 atcaattatgtttattgtatattcattaggcattactattagaat---caattatgtttattgtatattgattaggcattattgtatattcattaggcat 3378815  T
Q  741 t-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcagggaattacatt 815  Q
    | |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| |||||||||| ||||||||    
T  3378816 tcattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataataatcaggggattacatt 3378894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 644 - 815
Target Start/End: Complemental strand, 38618471 - 38618296
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatttgacttgtcaaatatgta-att--atattgaataggcattattgaatattcattaggcat 740  Q
    ||||||||| ||||||||||||||||||||||||| |||| || |   ||| |||||  |||  ||||||| |||||||||||| |||||||||||||||    
T  38618471 atcaattatgtttattgtatattcattaggcattactattagaat---caattatgtttattgtatattgattaggcattattgtatattcattaggcat 38618375  T
Q  741 t-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcagggaattacatt 815  Q
    | |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| |||||||||| ||||||||    
T  38618374 tcattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataataatcaggggattacatt 38618296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 644 - 815
Target Start/End: Complemental strand, 38614069 - 38613894
Alignment:
Q  644 atcaattatttttattgtatattcattaggcattattatttgacttgtcaaatatgta-att--atattgaataggcattattgaatattcattaggcat 740  Q
    ||||||||| ||||||||||||||||||| ||||| |||| || |   ||| |||||  |||  ||||| | |||||||||||| |||||||||||||||    
T  38614069 atcaattatgtttattgtatattcattagacattactattagaat---caattatgtttattgtatattcattaggcattattgtatattcattaggcat 38613973  T
Q  741 t-attagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcagggaattacatt 815  Q
    | |||||||||||||| |||||||||||||||||||||| |||   |||| |||||||| |||||| ||| ||||||||    
T  38613972 tcattagtttctatatcagaatcagaaacaattgtatatctatcacaattctcatcaataataatcgggggattacatt 38613894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 1881889 - 1881780
Alignment:
Q  142 taaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaa 241  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||| ||| ||  | || |||| ||||||||||||   ||||||||||  ||| ||    
T  1881889 taaaaccaaataggttcaaatattatgttactcatcaaaggacatcgagggacaaactcaaccttcatatttatcaaacttttaaccatatagactacaa 1881790  T
Q  242 tctcattttt 251  Q
    ||||||||||    
T  1881789 tctcattttt 1881780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 648 - 807
Target Start/End: Original strand, 9694 - 9857
Alignment:
Q  648 attatttttattgtatattcattaggcattattatttgacttgtcaaatatgta-att--atattgaataggcattattgaatattcattaggcatt-at 743  Q
    ||||| ||||||||||||||||||||||||| |||| || |   ||| |||||  |||  ||||||| |||||||||||| |||||||||||||||| ||    
T  9694 attatgtttattgtatattcattaggcattactattagaat---caattatgtttattgtatattgattaggcattattgtatattcattaggcattcat 9790  T
Q  744 tagtttctatattagaatcagaaacaattgtatatgtat---aattgtcatcaattataatcaggga 807  Q
    |||||||||||| |||||||||||||||||||||  |||   |||| |||||||| |||||||||||    
T  9791 tagtttctatatcagaatcagaaacaattgtatacctatcacaattctcatcaataataatcaggga 9857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 48140 - 48033
Alignment:
Q  143 aaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaat 242  Q
    ||||||||||||||||| |||| ||||| ||||| |||||||||||| ||| ||||| || |||| ||||||||||||  |||||||| || ||||||||    
T  48140 aaaaccaaataggttcacatatcatgtttcgcattaagggacatcgagggacaagttcaatcttcatatttatcaaacttgtaaccatgtatgctaaaat 48041  T
Q  243 ctcatttt 250  Q
    ||||||||    
T  48040 ctcatttt 48033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 47992 - 47918
Alignment:
Q  142 taaaaccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatc 216  Q
    |||||||||| ||||||| |||| ||||| ||||| |||||||||||  ||| |||||  ||||||| |||||||    
T  47992 taaaaccaaagaggttcacatatcatgtttcgcatgaagggacatcgtgggataagttctaacttcccatttatc 47918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 417 - 498
Target Start/End: Complemental strand, 31686 - 31605
Alignment:
Q  417 gaataaagagagatgttgcggtgattacagaaattaaatttacaagagttgcacgactaaccttgaaaatactccatattga 498  Q
    ||||||| |||||||||||||||| || |||||||||||||||||||||| ||||||||||||||| |||| | ||||||||    
T  31686 gaataaaaagagatgttgcggtgaatatagaaattaaatttacaagagttacacgactaaccttgagaatattgcatattga 31605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 185
Target Start/End: Complemental strand, 34738 - 34548
Alignment:
Q  5 accgaatacaaaaccaaataggtacccata--atgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaaat 102  Q
    ||||||||||||||||||||||| | || |  ||||||||||| || ||||| |  |||||||| |||||||||||| | | || |||| |||| |||||    
T  34738 accgaatacaaaaccaaataggttcacaaaccatgttttaaattaagggacaagttcaaccttcccatttatcaaacct-gtaagcatacaggccaaaat 34640  T
Q  103 cacgttttcgcgacaagg-------caatactat--attaaccaaatttaaaaccaaataggttcaaatattatgttacgcatcaagggaca 185  Q
    | ||||||||||||||||       ||||||| |   || |||  ||||| ||||| |||||||||||||| ||||| ||||||||||||||    
T  34639 ctcgttttcgcgacaagggccatttcaatactttcattttaccgtatttacaaccacataggttcaaatatcatgtttcgcatcaagggaca 34548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 220
Target Start/End: Complemental strand, 34307 - 34234
Alignment:
Q  147 ccaaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaac 220  Q
    ||||||||||||| |||| ||||| |||||||| ||||||||| | | ||||| |||||||| |||||||||||    
T  34307 ccaaataggttcacatatcatgtttcgcatcaaaggacatcgaggcagaagttcaaacttcccatttatcaaac 34234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 34452 - 34344
Alignment:
Q  13 caaaaccaaataggtacccata--atgttttaaatcaaaggacatgcccaaccttcgcatttatcaaacttcggaaccatataggctaaaatcacgtttt 110  Q
    ||||||||||||||| | ||||  || ||||||||||| ||||| |  |||||||| |||||||||||||| | || ||||||  | |||||| ||||||    
T  34452 caaaaccaaataggttcacatatcattttttaaatcaatggacaagttcaaccttcccatttatcaaactt-gtaagcatataccccaaaatctcgtttt 34354  T
Q  111 cgcgacaagg 120  Q
    ||||||||||    
T  34353 cgcgacaagg 34344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 31941 - 31851
Alignment:
Q  166 atgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaatctcatttttgcgcc 256  Q
    ||||| ||||| |||||||||||| ||| ||||| ||  ||||| ||||||||||  | |||||||||| |||||| |||| ||| |||||    
T  31941 atgtttcgcattaagggacatcgagggacaagttcaattttcctttttatcaaacttgcaaccatataaactaaaacctcaatttcgcgcc 31851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 254
Target Start/End: Complemental strand, 24513568 - 24513474
Alignment:
Q  160 aatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaatctcatttttgcg 254  Q
    |||||||||||||||||||| ||||||||| |||  | || || |||| ||| ||||||||   |||||||||| ||||||||||||||||||||    
T  24513568 aatattatgttacgcatcaaaggacatcgagggacgaattcaaccttcatatctatcaaacttctaaccatataggctaaaatctcatttttgcg 24513474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 250
Target Start/End: Complemental strand, 24513074 - 24512972
Alignment:
Q  148 caaataggttcaaatattatgttacgcatcaagggacatcgaaggaaaagtttaaacttcctatttatcaaacaagtaaccatataagctaaaatctcat 247  Q
    |||||||||||| |||| ||||| ||| |||||||||||||| ||| | ||| || ||||  | |||||||||   |||||||||| |||| ||||||||    
T  24513074 caaataggttcacatatcatgtttcgcgtcaagggacatcgagggatatgttcaaccttcaaaattatcaaacctttaaccatataggctacaatctcat 24512975  T
Q  248 ttt 250  Q
    |||    
T  24512974 ttt 24512972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 24513750 - 24513701
Alignment:
Q  70 tttatcaaacttcggaaccatataggctaaaatcacgttttcgcgacaagg 120  Q
    |||||||||||||  ||||||||||||||||||| | ||||||||||||||    
T  24513750 tttatcaaacttct-aaccatataggctaaaatctcattttcgcgacaagg 24513701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 110523 - 110474
Alignment:
Q  138 aatttaaaaccaaataggttcaaatattatgttacgcatcaagggacatc 187  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  110523 aatttaaaaccaaataggttcaaatattatgttactcatcaaaggacatc 110474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 110606 - 110558
Alignment:
Q  204 cttcctatttatcaaacaagtaaccatataagctaaaatctcatttttg 252  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||    
T  110606 cttcatatttatcaaactagtaaccatataagctaaaatctcatttttg 110558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 591
Target Start/End: Complemental strand, 7324409 - 7324312
Alignment:
Q  494 attgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttcac 591  Q
    |||||| |||| ||||| ||| |||| ||||| ||||||||||| ||| | || ||||| || || || ||||||||||||||||| |||||||||||    
T  7324409 attgagatggacattcacttcgttcgtgaaaaagtggctcgtggacaagtacgtgttctacatgtcccctcacgatatcaaattgccgatattttcac 7324312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 662 - 705
Target Start/End: Original strand, 21541914 - 21541957
Alignment:
Q  662 atattcattaggcattattatttgacttgtcaaatatgtaatta 705  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  21541914 atattcattagacattattagttgacttgtcaaatatgtaatta 21541957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 604
Target Start/End: Original strand, 28552920 - 28553023
Alignment:
Q  501 tggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttcacaactggtct 600  Q
    |||||||||| ||| |||| ||||| ||||||||||| ||| | || ||||| || ||  | ||||||||||||||||  ||||||||||| |  |||||    
T  28552920 tggatattcacttcgttcgtgaaaaagtggctcgtggacaagtacgtgttctacatgtcacctcacgatatcaaattgtcgatattttcacgaaaggtct 28553019  T
Q  601 tccc 604  Q
    ||||    
T  28553020 tccc 28553023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 501 - 604
Target Start/End: Original strand, 28560887 - 28560990
Alignment:
Q  501 tggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttcacaactggtct 600  Q
    |||||||||| ||| |||| ||||| ||||||||||| ||| | || ||||| || ||  | ||||||||||||||||  ||||||||||| |  |||||    
T  28560887 tggatattcacttcgttcgtgaaaaagtggctcgtggacaagtacgtgttctacatgtcacctcacgatatcaaattgtcgatattttcacgaaaggtct 28560986  T
Q  601 tccc 604  Q
    ||||    
T  28560987 tccc 28560990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 491 - 593
Target Start/End: Original strand, 22305 - 22407
Alignment:
Q  491 catattgagttggatattcatttctttcgcgaaaaggtggctcgtggccaaatccgagttctgcacgtaccatcacgatatcaaattgcagatattttca 590  Q
    ||||| ||| |||||||||||||  |||||||||| || ||||||||  || | ||||| || ||||| || ||||| || || |||||||||||||| |    
T  22305 catatcgagatggatattcattttgttcgcgaaaaagttgctcgtggggaagttcgagtcctacacgtcccctcacgctaccagattgcagatattttta 22404  T
Q  591 caa 593  Q
    |||    
T  22405 caa 22407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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