View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11948_high_7 (Length: 465)
Name: NF11948_high_7
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 451
Target Start/End: Complemental strand, 29108194 - 29107761
Alignment:
| Q |
18 |
gtgtaacatcctgattcctgaatatcattttgtgaagtattttaggttgtgcttagacagcttcatcgatcctctacatattgagagaggaaggggtgat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
29108194 |
gtgtaacatcctgattcctgaatatcattttgtgaagtattttaggttgtgcttagacagcttcatcgatcctctacatatcgagagaggaagcggtgat |
29108095 |
T |
|
| Q |
118 |
aaactatgtaagtgatctcggaggcattgaatgacaataaatttaccaacttactgctatagtaagaggaaaggaggtcgtaggagcggcttacaattct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29108094 |
aaactatgtaagtgatctcggaggcattgaatgacaataaatttaccaacttactgctatagtaagaggaaaggaggtcgtaggagcggcttacaattct |
29107995 |
T |
|
| Q |
218 |
gagaattcagattttattacataaaagcctttcggtatatatcaaagctaattgttaacaaagggaaaatcaacgagtatttgtcgaggttattttagag |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29107994 |
gagaattcagattttattacataaaagcctttcggtatatatcaaagctaattattaacaaagggaaaatcaacgagtatttgtcgaggttattgtagag |
29107895 |
T |
|
| Q |
318 |
tttttgtactagtaatgtcaagaaagtgttaactgcaatttggtaaatacttttcgaaaatggatactttaactatggagtatttgacaagatatatttt |
417 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29107894 |
tttttgtactagtaatatcaagaaagtgttaactgcaatttggtaaatacttttcgaaaatggatactttaactatggagtatttgacaagatatatttt |
29107795 |
T |
|
| Q |
418 |
gatttagacgagtgttttgttttcagcttctgtg |
451 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |
|
|
| T |
29107794 |
gatttgaacgagtgttttgttttcagcttctgtg |
29107761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 29851087 - 29851155
Alignment:
| Q |
321 |
ttgtactagtaatgtcaagaaagtgttaactgcaatttggtaaata-cttttcgaaaatggatacttta |
388 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||| ||||| | ||| |||| |||||||||||||||| |
|
|
| T |
29851087 |
ttgtacttgtgatgccaagaaagtgttaactgcagtttggcagatatctttctgaaaatggatacttta |
29851155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University