View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11948_low_10 (Length: 379)

Name: NF11948_low_10
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11948_low_10
NF11948_low_10
[»] scaffold0008 (2 HSPs)
scaffold0008 (65-360)||(65438-65733)
scaffold0008 (65-360)||(73281-73576)


Alignment Details
Target: scaffold0008 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 65 - 360
Target Start/End: Original strand, 65438 - 65733
Alignment:
Q  65 ttctaagaggatcttttagaggaatcagattaaaacagattcagagctaacaaataaggaagtttttattttcaaatcgtgtcataaagtgactaagata 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  65438 ttctaagaggatcttttagaggaatcagattaaaacagattcagtgctaacaaataaggaagttcttattttcaaatcgtgtcataaagtgactaagata 65537  T
Q  165 tgtatccatttttgttaagnnnnnnngaaaggtgacattggaaagactaatgaaaaatgtttgaccacagaaattactcaattcttgtaacacctttgac 264  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  65538 tgtatccatttttgttaagaaaaaaagaaaggtgacattggaaagactaatgaaaaatgtttgaccacagaaattactcaattcttgtaacacctttgac 65637  T
Q  265 attctgtggttaggataagggtaacaaccgatctatccgttttcaaacttgttttgcgcccatgcatttaattttattatgagtacacttgcacaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  65638 attctgtggttaggataagggtaacaaccgatctatccgttttcaaacttgttttgcgcccatgcatttaattttattatgagtacacttgcacaa 65733  T

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Target: scaffold0008; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 65 - 360
Target Start/End: Original strand, 73281 - 73576
Alignment:
Q  65 ttctaagaggatcttttagaggaatcagattaaaacagattcagagctaacaaataaggaagtttttattttcaaatcgtgtcataaagtgactaagata 164  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  73281 ttctaagaggatcttttagaggaatcagattaaaacagattcagtgctaacaaataaggaagttcttattttcaaatcgtgtcataaagtgactaagata 73380  T
Q  165 tgtatccatttttgttaagnnnnnnngaaaggtgacattggaaagactaatgaaaaatgtttgaccacagaaattactcaattcttgtaacacctttgac 264  Q
    |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73381 tgtatccatttttgttaagaaaaaaagaaaggtgacattggaaagactaatgaaaaatgtttgaccacagaaattactcaattcttgtaacacctttgac 73480  T
Q  265 attctgtggttaggataagggtaacaaccgatctatccgttttcaaacttgttttgcgcccatgcatttaattttattatgagtacacttgcacaa 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73481 attctgtggttaggataagggtaacaaccgatctatccgttttcaaacttgttttgcgcccatgcatttaattttattatgagtacacttgcacaa 73576  T

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