View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11948_low_11 (Length: 368)

Name: NF11948_low_11
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11948_low_11
NF11948_low_11
[»] chr5 (20 HSPs)
chr5 (1-355)||(40786555-40786929)
chr5 (99-170)||(24228363-24228434)
chr5 (99-170)||(24213370-24213441)
chr5 (224-317)||(29742029-29742119)
chr5 (170-220)||(24228292-24228342)
chr5 (224-310)||(32928939-32929022)
chr5 (82-165)||(35074208-35074292)
chr5 (170-225)||(24213294-24213349)
chr5 (78-171)||(16633354-16633446)
chr5 (224-286)||(24213214-24213273)
chr5 (73-119)||(21575048-21575094)
chr5 (78-119)||(17604690-17604731)
chr5 (78-170)||(35105030-35105122)
chr5 (101-163)||(19479552-19479614)
chr5 (252-310)||(31108917-31108975)
chr5 (224-252)||(24228239-24228267)
chr5 (58-105)||(25214564-25214609)
chr5 (58-105)||(25278714-25278759)
chr5 (275-307)||(28663533-28663565)
chr5 (170-218)||(31109011-31109058)
[»] chr3 (10 HSPs)
chr3 (59-170)||(20463207-20463318)
chr3 (59-170)||(20458842-20458952)
chr3 (99-170)||(13639624-13639695)
chr3 (59-164)||(20459075-20459180)
chr3 (78-170)||(7642305-7642396)
chr3 (78-170)||(21587214-21587306)
chr3 (78-165)||(44122085-44122172)
chr3 (224-280)||(38419988-38420041)
chr3 (170-219)||(13639716-13639765)
chr3 (176-216)||(20458775-20458815)
[»] chr8 (5 HSPs)
chr8 (59-164)||(29185623-29185726)
chr8 (276-355)||(15007260-15007339)
chr8 (224-317)||(22274915-22275005)
chr8 (252-312)||(28350468-28350528)
chr8 (177-224)||(29185542-29185589)
[»] chr2 (8 HSPs)
chr2 (99-170)||(25232018-25232089)
chr2 (99-165)||(25225713-25225779)
chr2 (224-307)||(7394643-7394723)
chr2 (78-163)||(19912279-19912364)
chr2 (82-171)||(45276354-45276443)
chr2 (177-224)||(25232117-25232164)
chr2 (252-306)||(19084695-19084749)
chr2 (179-225)||(25225814-25225860)
[»] chr6 (1 HSPs)
chr6 (99-170)||(19441220-19441291)
[»] chr1 (16 HSPs)
chr1 (99-170)||(18640580-18640650)
chr1 (99-170)||(29547775-29547846)
chr1 (79-170)||(28201725-28201817)
chr1 (224-286)||(27417327-27417390)
chr1 (99-170)||(29530120-29530191)
chr1 (82-160)||(32808782-32808859)
chr1 (224-292)||(36686843-36686908)
chr1 (78-170)||(11444112-11444204)
chr1 (104-165)||(18643285-18643346)
chr1 (177-225)||(11444036-11444084)
chr1 (224-289)||(11443954-11444016)
chr1 (183-218)||(18643228-18643263)
chr1 (176-225)||(11441667-11441716)
chr1 (229-312)||(18643116-18643196)
chr1 (224-286)||(11441588-11441647)
chr1 (170-218)||(15552979-15553026)
[»] chr4 (11 HSPs)
chr4 (224-304)||(12753587-12753664)
chr4 (224-307)||(17350010-17350090)
chr4 (99-171)||(26654461-26654533)
chr4 (250-286)||(28874334-28874370)
chr4 (78-116)||(5350929-5350967)
chr4 (81-162)||(18902153-18902234)
chr4 (80-165)||(51700361-51700446)
chr4 (58-170)||(56341873-56341983)
chr4 (99-167)||(7895117-7895185)
chr4 (78-170)||(12746623-12746715)
chr4 (250-286)||(46694139-46694174)
[»] scaffold0066 (1 HSPs)
scaffold0066 (224-286)||(11794-11853)
[»] chr7 (5 HSPs)
chr7 (78-170)||(7578536-7578628)
chr7 (78-153)||(35339066-35339141)
chr7 (224-286)||(42939966-42940025)
chr7 (99-170)||(42129528-42129599)
chr7 (78-119)||(14719460-14719501)


Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 40786555 - 40786929
Alignment:
Q  1 caacattatattcattaattgattgagggcttgtgagatgagtcaactacttactacatgttatgaataattataagttagtggatgtccattcttggtc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40786555 caacattatattcattaattgattgagggcttgtgagatgagtcaactacttactacatgttatgaataattataagttagtggatgttcattcttggtc 40786654  T
Q  101 ttccaccttcctataaccctcagtagtaaatgtatggt--tagtggtccttaattggtttgatcatttacttaggatctatattgtaatgtaaataacac 198  Q
    ||||||||||||||||||| || |||||||||||||||  |||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |||||    
T  40786655 ttccaccttcctataacccccattagtaaatgtatggttatagtggtccttaattgatttgatcattcacttaggacctatattgtaatgtaaagaacac 40786754  T
Q  199 acttgtgaagtaatacaatacactc---------------------ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaat 277  Q
    |||||||||||||||||||||||||                     |||||||||||||||||||||||   ||||||||||||||||||||| ||||||    
T  40786755 acttgtgaagtaatacaatacactcttatgttctctctttgtttctttctctctattcttatatacttt---ataatatcttgcaatgctaagaatcaat 40786851  T
Q  278 ttcataacacgttatcggcacgaagctctaccaatttgaggtaatactaattcttgttttttatgatagaacttattg 355  Q
    |||||||||| ||||  |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||    
T  40786852 ttcataacacattatgagcacgaagctatgccaatttgaggtaatactaattcttgttttttatgatataacttattg 40786929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 24228434 - 24228363
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||||||||||||| || || ||||||||||| ||||| |||||||||||||||||| ||||    
T  24228434 tcttccaccttcctataaccctcattaatatatgtatggttattggtctttaattggtttgatcattcactt 24228363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 24213441 - 24213370
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||| |||||||  || ||||||||||||||||| ||||| |||||||||||||||||| ||||    
T  24213441 tcttccaccttcttataacctccattagtaaatgtatggttattggtctttaattggtttgatcattcactt 24213370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 29742119 - 29742029
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctctaccaatttgag 317  Q
    |||||||||||||||||||||||| |||| |   |||||||||   |||| ||||||||||||||||||| ||||||||||||| |||| ||||    
T  29742119 ttctctctattcttatatactttacaatatt---ttgcaatgcattggattaatttcataacacgttatcagcacgaagctctatcaatctgag 29742029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 24228342 - 24228292
Alignment:
Q  170 taggatctatattgtaatgtaaataacacacttgtgaagtaatacaataca 220  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  24228342 taggatctatattgtaatgtaaagtacacacttgtgaagtaatacaataca 24228292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 32928939 - 32929022
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctctacca 310  Q
    |||||||||||||||||| |||||| |||   |||||||||| ||| ||||||||||| |||||||||||  ||||||||| |||||    
T  32928939 ttctctctattcttatatgctttatgata---tcttgcaatgttaatgatcaatttcaaaacacgttatcaacacgaagctttacca 32929022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 35074292 - 35074208
Alignment:
Q  82 tggatgtccattcttg-gtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatt 165  Q
    ||||||||||| |||  ||||| |||||||||||||  |||| |||| |||||||| ||||||||||||||||| ||||||||||    
T  35074292 tggatgtccatccttaagtctttcaccttcctataattctcactagtgaatgtatgattagtggtccttaattgctttgatcatt 35074208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 24213349 - 24213294
Alignment:
Q  170 taggatctatattgtaatgtaaataacacacttgtgaagtaatacaatacactctt 225  Q
    ||||| |||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  24213349 taggacctatattgtaatgtaaagtacatacttgtgaagtaatacaatacactctt 24213294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 16633446 - 16633354
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactta 171  Q
    ||||||||||||||| ||| |||||||||||||||||||||| || |||  | || || |||||||| ||||||||  |||||||||| |||||    
T  16633446 ttagtggatgtccatccttagtcttccaccttcctataaccc-cattagcgagtgaatagttagtggaccttaattactttgatcattcactta 16633354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 24213273 - 24213214
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataaca 286  Q
    ||||||||| | |||||||||||||||||   |||| ||||||||||||||||||||||||||    
T  24213273 ttctctctaatgttatatactttataata---tcttacaatgctaaggatcaatttcataaca 24213214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 21575094 - 21575048
Alignment:
Q  73 ataagttagtggatgtccattcttggtcttccaccttcctataaccc 119  Q
    |||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  21575094 ataacttagtggatgtccatccttagtcttccaccttcctataaccc 21575048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 17604690 - 17604731
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccc 119  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  17604690 ttagtggatgtccatccttagtcttccaccttcctataaccc 17604731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 35105030 - 35105122
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||||||||||| ||| ||||| |||||| | ||||| | ||  ||| |||| |||||||||| |||||||||  |||||||||| ||||    
T  35105030 ttagtggatgtccatccttagtcttacaccttgcaataactcccataagtgaatggatggttagtgatccttaattactttgatcattcactt 35105122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 163
Target Start/End: Complemental strand, 19479614 - 19479552
Alignment:
Q  101 ttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatca 163  Q
    ||||||||||||||||| |||| |||||| || || |||||||| |||||||||  |||||||    
T  19479614 ttccaccttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatca 19479552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 31108975 - 31108917
Alignment:
Q  252 aatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctctacca 310  Q
    ||||| |||||||||||  ||| ||||||||||||||||||||| | || |||||||||    
T  31108975 aatattttgcaatgctatagattaatttcataacacgttatcggtatgatgctctacca 31108917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 252
Target Start/End: Complemental strand, 24228267 - 24228239
Alignment:
Q  224 ttctctctattcttatatactttataata 252  Q
    |||||||||||||||||||||||||||||    
T  24228267 ttctctctattcttatatactttataata 24228239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 25214609 - 25214564
Alignment:
Q  58 atgttatgaataattataagttagtggatgtccattcttggtcttcca 105  Q
    |||||||||||||| |  |||||||||||||||||||||| |||||||    
T  25214609 atgttatgaataataa--agttagtggatgtccattcttgatcttcca 25214564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Complemental strand, 25278759 - 25278714
Alignment:
Q  58 atgttatgaataattataagttagtggatgtccattcttggtcttcca 105  Q
    |||||||||||||| |  |||||||||||||||||||||| |||||||    
T  25278759 atgttatgaataataa--agttagtggatgtccattcttgatcttcca 25278714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 28663565 - 28663533
Alignment:
Q  275 aatttcataacacgttatcggcacgaagctcta 307  Q
    ||||||||||||||||||| |||||||||||||    
T  28663565 aatttcataacacgttatcagcacgaagctcta 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 31109058 - 31109011
Alignment:
Q  170 taggatctatattgtaatgtaaataacacacttgtgaagtaatacaata 218  Q
    |||||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  31109058 taggatctatattgcaatgtaa-tgacacacttgtgaagtaatataata 31109011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 20463318 - 20463207
Alignment:
Q  59 tgttatgaataattataagttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggttt 158  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||  | |||| |||||||||||||||| |||||| || | |    
T  20463318 tgttatgaataattataagttagtggatgtccattcttagtcttcctccttcctataatccctattagtgaatgtatggttagtggaccttaaatgctgt 20463219  T
Q  159 gatcatttactt 170  Q
    ||||||| ||||    
T  20463218 gatcattcactt 20463207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 20458952 - 20458842
Alignment:
Q  59 tgttatgaataattataagttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggttt 158  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||| || |||| ||||| |||||||||  |||||| || |||    
T  20458952 tgttatgaataattataagttagtggatgtccatccttaatcttccaccttcctataaccc-cattagtgaatgtttggttagtgaaccttaaatgtttt 20458854  T
Q  159 gatcatttactt 170  Q
    ||||||| ||||    
T  20458853 gatcattcactt 20458842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 13639624 - 13639695
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13639624 tcttccaccttcctataaccttcgttagtaaatgtatggttagtggtccttaattggtttgatcattcactt 13639695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 20459075 - 20459180
Alignment:
Q  59 tgttatgaataattataagttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggttt 158  Q
    |||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||| ||| || |  |||| |||| ||||||||||| |||||| || |||    
T  20459075 tgttatgaataattataagttagtggctgttcatccttagtcttccaccttcctgtaatccccgttagtgaatgcatggttagtggaccttaaatgcttt 20459174  T
Q  159 gatcat 164  Q
    ||||||    
T  20459175 gatcat 20459180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 7642305 - 7642396
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||||  ||  ||||||||||||||||||||| || |||| ||| |||||||||||||||||||||  |||||||||||||||    
T  7642305 ttagtggatgtccatctttaatcttccaccttcctataaccc-cattagtgaatttatggttagtggtccttaattactttgatcatttactt 7642396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 21587306 - 21587214
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||| ||||||  |||  ||||||||||||||||||||| || |||| || |||||||||||| ||||||| || |||||||||| ||||    
T  21587306 ttagtgggtgtccacccttaatcttccaccttcctataacccccattagtgaaagtatggttagtgatccttaactgctttgatcattcactt 21587214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 165
Target Start/End: Complemental strand, 44122172 - 44122085
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatt 165  Q
    ||||||||||||||| |||  ||||||||||||||||||||   | |||| |||||||| ||| |||||||||||   ||||||||||    
T  44122172 ttagtggatgtccatccttaatcttccaccttcctataaccaatattagtgaatgtatgcttaatggtccttaatgactttgatcatt 44122085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 38419988 - 38420041
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttc 280  Q
    ||||||||||||||| |||||||||||   |||||||||||| ||||||||||||||    
T  38419988 ttctctctattcttacatactttataa---tatcttgcaatgttaaggatcaatttc 38420041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 219
Target Start/End: Original strand, 13639716 - 13639765
Alignment:
Q  170 taggatctatattgtaatgtaaataacacacttgtgaagtaatacaatac 219  Q
    ||||| ||||||||||||||||| ||||||||||||||  ||||||||||    
T  13639716 taggacctatattgtaatgtaaagaacacacttgtgaaacaatacaatac 13639765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 20458815 - 20458775
Alignment:
Q  176 ctatattgtaatgtaaataacacacttgtgaagtaatacaa 216  Q
    ||||||||||||||||| |||||||||| |||| |||||||    
T  20458815 ctatattgtaatgtaaagaacacacttgagaagcaatacaa 20458775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 29185726 - 29185623
Alignment:
Q  59 tgttatgaataattataagttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggttt 158  Q
    ||||||||||||| |  |||| ||||||||||||||||| |||||||||||||||||| || || |||||||| ||||||| ||||||||||||| ||||    
T  29185726 tgttatgaataataa--agttggtggatgtccattcttgatcttccaccttcctataatccccattagtaaatatatggtttgtggtccttaattcgttt 29185629  T
Q  159 gatcat 164  Q
    ||||||    
T  29185628 gatcat 29185623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 355
Target Start/End: Original strand, 15007260 - 15007339
Alignment:
Q  276 atttcataacacgttatcggcacgaagctctaccaatttgaggtaatactaattcttgttttttatgatagaacttattg 355  Q
    ||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  15007260 atttcataacacgttctcagcacgaagctctatcaatttgaggtaatactaattcttgttttttattatataactaattg 15007339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 317
Target Start/End: Original strand, 22274915 - 22275005
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctctaccaatttgag 317  Q
    |||||||||||||||||||||||| ||||   ||||||||||||  |||| |||||||||||||||||||  |||||||||||| |||| ||||    
T  22274915 ttctctctattcttatatactttacaata---tcttgcaatgctttggattaatttcataacacgttatcaacacgaagctctatcaatatgag 22275005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 28350528 - 28350468
Alignment:
Q  252 aatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctctaccaat 312  Q
    ||||||||||||| ||  |||| ||||||||||||||||||| ||||||||||||| ||||    
T  28350528 aatatcttgcaatactttggattaatttcataacacgttatcagcacgaagctctatcaat 28350468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 29185589 - 29185542
Alignment:
Q  177 tatattgtaatgtaaataacacacttgtgaagtaatacaatacactct 224  Q
    |||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  29185589 tatattgtaatgtaaaaaacacacttgtgaagtaatgcaatatactct 29185542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 25232018 - 25232089
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||| ||||    
T  25232018 tcttccaccttcctataactcccattagtaaatgtatggttagtggtccttaattggtttgatcattcactt 25232089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 25225713 - 25225779
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatt 165  Q
    |||||||||||| |||||| |||| |||||||||||||||||||| | |||||||||||||||||||    
T  25225713 tcttccaccttcatataactctcattagtaaatgtatggttagtgattcttaattggtttgatcatt 25225779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 307
Target Start/End: Complemental strand, 7394723 - 7394643
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctcta 307  Q
    ||||||||||| |||||||||||||||||   ||| ||||||||  |||| ||||||||||||||||||| ||||||| |||||    
T  7394723 ttctctctatttttatatactttataata---tctagcaatgctttggattaatttcataacacgttatcagcacgaaactcta 7394643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 19912279 - 19912364
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatca 163  Q
    ||||||||||||||  |||  |||||||||||||||||||||  | || | |||||||||||||| ||||||||||| ||||||||    
T  19912279 ttagtggatgtccacccttaatcttccaccttcctataacccctattattgaatgtatggttagtagtccttaattgctttgatca 19912364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 45276354 - 45276443
Alignment:
Q  82 tggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactta 171  Q
    ||||||||||| | |  |||||||||||||||||||||    |||| |||||||||||||||||||||||| | ||||| |||| |||||    
T  45276354 tggatgtccatccctcatcttccaccttcctataacccatgttagtgaatgtatggttagtggtccttaatagttttgaccattcactta 45276443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 25232117 - 25232164
Alignment:
Q  177 tatattgtaatgtaaataacacacttgtgaagtaatacaatacactct 224  Q
    |||||||||||||||| |||||||||| |||| |||||||||||||||    
T  25232117 tatattgtaatgtaaagaacacacttgagaagcaatacaatacactct 25232164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 306
Target Start/End: Original strand, 19084695 - 19084749
Alignment:
Q  252 aatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctct 306  Q
    ||||||||||||| ||   ||||||||||||||||||||||| ||||||||||||    
T  19084695 aatatcttgcaatacttttgatcaatttcataacacgttatcagcacgaagctct 19084749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 25225814 - 25225860
Alignment:
Q  179 tattgtaatgtaaataacacacttgtgaagtaatacaatacactctt 225  Q
    |||||||||||||| |||||| ||| |||| ||||||||||||||||    
T  25225814 tattgtaatgtaaagaacacagttgagaagcaatacaatacactctt 25225860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 19441291 - 19441220
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||||||||||||||||| || | |||||| ||||||||||||||||||| ||||||||||||| ||||    
T  19441291 tcttccaccttcctataacccccattggtaaatctatggttagtggtccttaaatggtttgatcattcactt 19441220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 18640650 - 18640580
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||| ||||    
T  18640650 tcttccaccttcctataacc-tcattagtgaatgtatggttagtggtccttaattgctttgatcattcactt 18640580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 29547775 - 29547846
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||||||| || || ||||||||| |||||||||||||||||||| ||||||||||| ||||    
T  29547775 tcttccaccttcctataatccccattagtaaatgcatggttagtggtccttaatttgtttgatcattcactt 29547846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 28201817 - 28201725
Alignment:
Q  79 tagtggatgtccattcttggtcttccaccttcctataaccct-cagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||| |||  |||||||||||||||||||||| || |||| |||||||||||||| ||| ||||||| |||||| ||| ||||    
T  28201817 tagtggatgtccatcctttatcttccaccttcctataaccctccattagtgaatgtatggttagtagtctttaattgctttgataattcactt 28201725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 27417390 - 27417327
Alignment:
Q  224 ttctctctattcttatatactttataa-taatatcttgcaatgctaaggatcaatttcataaca 286  Q
    ||||||||||||||||||||||| ||  ||||| ||||||||||||| ||||||||||||||||    
T  27417390 ttctctctattcttatatactttgtacgtaatagcttgcaatgctaatgatcaatttcataaca 27417327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 29530120 - 29530191
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||| ||||| ||| || ||  |||||||| |||||||||||||||||||||||||||||||| ||||    
T  29530120 tcttccactttcctgtaaaccccatcagtaaatgcatggttagtggtccttaattggtttgatcattcactt 29530191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 32808782 - 32808859
Alignment:
Q  82 tggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttga 160  Q
    ||||| ||||| |||  ||||||||||||||||||||| || |||| ||| |||||||||||||||||||||| |||||    
T  32808782 tggatttccatccttaatcttccaccttcctataaccc-cattagtgaatatatggttagtggtccttaattgatttga 32808859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 36686843 - 36686908
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttat 292  Q
    ||||||||||| |||||||||||||||   |||||||||||  |||| |||||||||||||||||||||    
T  36686843 ttctctctatttttatatactttataa---tatcttgcaatattaagaatcaatttcataacacgttat 36686908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 11444204 - 11444112
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||||||||||| |||  |||||||||||||||||||| | | |||| |||||||| ||| |||| ||||||   |||||||||| ||||    
T  11444204 ttagtggatgtccatccttaatcttccaccttcctataaccattattagtgaatgtatgcttaatggttcttaatgactttgatcattcactt 11444112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 18643346 - 18643285
Alignment:
Q  104 caccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatt 165  Q
    |||||| |||||| || || |||| | |||||||||||||||||||||||| ||||||||||    
T  18643346 cacctttctataatccccattagtgactgtatggttagtggtccttaattgctttgatcatt 18643285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 225
Target Start/End: Complemental strand, 11444084 - 11444036
Alignment:
Q  177 tatattgtaatgtaaataacacacttgtgaagtaatacaatacactctt 225  Q
    |||||| |||||| ||| |||||||||||||||||||||||| ||||||    
T  11444084 tatattataatgtgaattacacacttgtgaagtaatacaatatactctt 11444036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 11444016 - 11443954
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgt 289  Q
    ||||||||||| |||||||||||||   ||||| || |||||||||| ||||||||||||| ||||    
T  11444016 ttctctctattattatatactttat---aatatattacaatgctaagaatcaatttcataatacgt 11443954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 18643263 - 18643228
Alignment:
Q  183 gtaatgtaaataacacacttgtgaagtaatacaata 218  Q
    |||||||||| |||||||||||||||||||||||||    
T  18643263 gtaatgtaaagaacacacttgtgaagtaatacaata 18643228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 11441716 - 11441667
Alignment:
Q  176 ctatattgtaatgtaaataacacacttgtgaagtaatacaatacactctt 225  Q
    |||||||||||||| ||| |||||||| ||| ||||||||||||| ||||    
T  11441716 ctatattgtaatgtgaattacacacttatgaggtaatacaatacattctt 11441667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 312
Target Start/End: Complemental strand, 18643196 - 18643116
Alignment:
Q  229 tctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctctaccaat 312  Q
    ||||||||||||||||||| ||||   ||||| |||  |  | ||||||||||||||| |||||| ||| ||||||||||||||    
T  18643196 tctattcttatatactttacaata---tcttgtaatattttgaatcaatttcataacatgttatcagcatgaagctctaccaat 18643116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 286
Target Start/End: Complemental strand, 11441647 - 11441588
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataaca 286  Q
    ||||||||||| |||||||||| ||||||   ||||||||||||||  |||||||||| ||||    
T  11441647 ttctctctattattatatacttcataata---tcttgcaatgctaaaaatcaatttcacaaca 11441588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 15552979 - 15553026
Alignment:
Q  170 taggatctatattgtaatgtaaataacacacttgtgaagtaatacaata 218  Q
    ||||| |||||||| ||||||| | ||||||||||||||||||||||||    
T  15552979 taggacctatattgcaatgtaa-tgacacacttgtgaagtaatacaata 15553026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 12753664 - 12753587
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagct 304  Q
    |||||||||||||||||||||||| ||||   ||| ||||||||  |||| ||||||||||||||||||| ||||||||||    
T  12753664 ttctctctattcttatatactttacaata---tctagcaatgctctggattaatttcataacacgttatcagcacgaagct 12753587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 224 - 307
Target Start/End: Original strand, 17350010 - 17350090
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataacacgttatcggcacgaagctcta 307  Q
    ||||||||| |||||||||||||| ||||   ||||||||| ||   ||||||||||||||||||||||| |||||||||||||    
T  17350010 ttctctctactcttatatactttacaata---tcttgcaatacttttgatcaatttcataacacgttatcagcacgaagctcta 17350090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 26654461 - 26654533
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactta 171  Q
    |||||||||||||||||||| ||  | || |||||||||||||||||||||||||| |||||| ||| |||||    
T  26654461 tcttccaccttcctataaccatcgttggtgaatgtatggttagtggtccttaattgctttgattattcactta 26654533  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 28874334 - 28874370
Alignment:
Q  250 ataatatcttgcaatgctaaggatcaatttcataaca 286  Q
    |||||||||||||||| ||||||||||||||||||||    
T  28874334 ataatatcttgcaatgttaaggatcaatttcataaca 28874370  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 5350929 - 5350967
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataa 116  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  5350929 ttagtggatgtccatccttagtcttccaccttcctataa 5350967  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 18902234 - 18902153
Alignment:
Q  81 gtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatc 162  Q
    |||||||| ||| |||  |||| |||||||||||||||  || |||| |||| ||| ||| ||||||||||||| |||||||    
T  18902234 gtggatgttcatccttaatctttcaccttcctataacctccattagtgaatggatgcttaatggtccttaattgttttgatc 18902153  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 51700446 - 51700361
Alignment:
Q  80 agtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatt 165  Q
    ||||||||||||| |||  ||||| ||||| ||||||| |||| |||| |||||||| |||  ||| |||||||  ||||||||||    
T  51700446 agtggatgtccatccttaatcttctacctttctataactctcattagtgaatgtatgattatcggttcttaattattttgatcatt 51700361  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 170
Target Start/End: Complemental strand, 56341983 - 56341873
Alignment:
Q  58 atgttatgaataattataagttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtt 157  Q
    ||||||||||||  ||||| || |||||||| |||  || ||||||||||||||||||| | | | |||| | || ||||||||||||  ||||||| ||    
T  56341983 atgttatgaata--tataatttggtggatgttcatctttagtcttccaccttcctataatctttattagtgagtggatggttagtggtggttaattgttt 56341886  T
Q  158 tgatcatttactt 170  Q
    | |||||| ||||    
T  56341885 tcatcattcactt 56341873  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 7895117 - 7895185
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcattta 167  Q
    |||||||| || ||| |||| ||| |||| ||| |||||||||||||||||||||  ||||| ||||||    
T  7895117 tcttccacttttctacaaccttcattagtgaatatatggttagtggtccttaattattttgaacattta 7895185  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 12746715 - 12746623
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||||||||||| ||   ||||||||||||||||||||   | |||| |||||||  ||| |||||||||||   |||||||||| ||||    
T  12746715 ttagtggatgtccatcctcaatcttccaccttcctataaccactattagtgaatgtatacttaatggtccttaatgactttgatcattcactt 12746623  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 286
Target Start/End: Complemental strand, 46694174 - 46694139
Alignment:
Q  250 ataatatcttgcaatgctaaggatcaatttcataaca 286  Q
    ||||||||||||| |||||||||||||||||||||||    
T  46694174 ataatatcttgca-tgctaaggatcaatttcataaca 46694139  T

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Target: scaffold0066 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 11794 - 11853
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataaca 286  Q
    |||||| | ||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  11794 ttctctttgttcttatatactttataa---tatcttgcaatgctaaggatcaatttcataaca 11853  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 7578536 - 7578628
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    ||||||||||||||| ||| |||||||||||||| ||||  | ||  ||| |||| ||||| ||||||||||||||  |||||||||| ||||    
T  7578536 ttagtggatgtccatccttagtcttccaccttcccataagtcccataagtgaatggatggtcagtggtccttaattactttgatcattcactt 7578628  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 35339141 - 35339066
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaatt 153  Q
    |||||||||||||||  || |||||||||||||||||||| | ||  ||| |||| ||||||| ||||||||||||    
T  35339141 ttagtggatgtccatcattagtcttccaccttcctataactcccataagtgaatggatggttaatggtccttaatt 35339066  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 286
Target Start/End: Original strand, 42939966 - 42940025
Alignment:
Q  224 ttctctctattcttatatactttataataatatcttgcaatgctaaggatcaatttcataaca 286  Q
    |||||||||||||||||||||||   | ||||||||||||||||  |||| ||||||||||||    
T  42939966 ttctctctattcttatatacttt---acaatatcttgcaatgctttggattaatttcataaca 42940025  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 170
Target Start/End: Original strand, 42129528 - 42129599
Alignment:
Q  99 tcttccaccttcctataaccctcagtagtaaatgtatggttagtggtccttaattggtttgatcatttactt 170  Q
    |||||||||||||||||||||  | |||| ||| |||||||| || |||||||||  |||||||||| ||||    
T  42129528 tcttccaccttcctataacccctattagtgaatatatggttaatgatccttaatttctttgatcattcactt 42129599  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 14719501 - 14719460
Alignment:
Q  78 ttagtggatgtccattcttggtcttccaccttcctataaccc 119  Q
    ||||||||||||| | ||| ||||||||||||||||||||||    
T  14719501 ttagtggatgtccgtccttagtcttccaccttcctataaccc 14719460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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