View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11948_low_13 (Length: 296)
Name: NF11948_low_13
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 42639095 - 42639361
Alignment:
| Q |
20 |
accatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacattattcatccaataccataatgctgtc |
119 |
Q |
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| T |
42639095 |
accatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggttgatgacaccgtgcacgttattcatccaataccataatgctgtc |
42639194 |
T |
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| Q |
120 |
ttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaa |
219 |
Q |
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| T |
42639195 |
ttgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagata |
42639294 |
T |
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| Q |
220 |
gttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatc |
286 |
Q |
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| T |
42639295 |
gttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatc |
42639361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 24 - 286
Target Start/End: Original strand, 42634019 - 42634284
Alignment:
| Q |
24 |
tcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttg---gttgatgacaccgtgcacattattcatccaataccataatgctgtct |
120 |
Q |
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| T |
42634019 |
tcacattcaagtcgaccattaatggctctaaccgttgcaccaaagccttgttggttcatgacattgtgcacatgattcatccaataccataatgctgtct |
42634118 |
T |
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| Q |
121 |
tgaaggacactgtaggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtctcttccagctggtccatagttgtagttccaagaaag |
220 |
Q |
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| T |
42634119 |
tgaaggacactaaaggatcattggccactgtttcaggagagttcaattcatcaaaaccactgtcctttccagctggtccgtaattaaagttccaagataa |
42634218 |
T |
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| Q |
221 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatggccactctgtgttgccttcatc |
286 |
Q |
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| T |
42634219 |
ttgaatcggtccacggccatagtatcctttgttaggggcacacgggtactctgtgttgctttcatc |
42634284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 42628496 - 42628551
Alignment:
| Q |
20 |
accatcacattcaagtcgaccattaatggctctaatggttgcaccaaaaccttggt |
75 |
Q |
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| T |
42628496 |
accatcacattcaagtcgaccattaatggctctagtggttgcaccaaagccttggt |
42628551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 42628588 - 42628638
Alignment:
| Q |
134 |
aggatcattggccactgtttcaggtgagttcaatccatcaaaaccattgtc |
184 |
Q |
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| T |
42628588 |
aggatcattggccactgtttcaggagagttcaatccatcagaaccattgtc |
42628638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 42628651 - 42628694
Alignment:
| Q |
221 |
ttgaatcggtccacgaccatagtaacctttgttaggggcacatg |
264 |
Q |
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| T |
42628651 |
ttgaatcggtccacaaccatagaaccctttgttaggggcacatg |
42628694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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