View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11948_low_14 (Length: 239)
Name: NF11948_low_14
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4846110 - 4846327
Alignment:
| Q |
1 |
aaaaataaaagaatattctaatccttgagaaaaataaaccgagacaacttagtctttaatcgaacattatattgtcatgattttcaatttagttcaagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4846110 |
aaaaataaaagaatattctaatccttgagaaaaataaaccgagacaacttagtctttaatcgaacatt-----gtcatgattttcaatttagttcaagta |
4846204 |
T |
|
| Q |
101 |
agaattaagttgtcacaacttatttgtctctagggactcaaagttgtcctatattattctaagagactaaattagatgatgcattttttcttagggacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4846205 |
agaattaagttgtcacaacttatttgtctctagggactcaaagttgtcctatattattctaagagactaaattagatgatgcattttttcttagggacca |
4846304 |
T |
|
| Q |
201 |
cagtgggtcctcactccaataat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
4846305 |
cagtgggtcctcactccaataat |
4846327 |
T |
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