View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11948_low_2 (Length: 739)
Name: NF11948_low_2
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 15 - 721
Target Start/End: Complemental strand, 10399762 - 10399055
Alignment:
| Q |
15 |
atgaacccaaatatcgtattcttttgtcacattacacaacaactttataggatcaaccgcatttgttgaagttgttccaatagtagcgcataaaaaacaa |
114 |
Q |
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| T |
10399762 |
atgaacccaaatatcgtattcttttgtcacattacacaacaactttataggatcaacggcatttgttgaagttgttccaatagtagcgcataaaaaataa |
10399663 |
T |
|
| Q |
115 |
ggaaccaaaccattttcaacgtctaaaagaattgtcgaaagcaaagagtcgggggacaaagcaaataaatttgatccttttgtttttatgactctaaaat |
214 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10399662 |
ggaatcaaaccattgtcaacgtctaaaagaattgtcgaaagcaaagagtcgggggacaaagcaaataaatttgatccttttgtttttatgactctaaaat |
10399563 |
T |
|
| Q |
215 |
tttctgaattaattccaacaatttgagaagctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttttccaatatcgtcctttccaat |
314 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10399562 |
tttctgaatgaattccaacaatttgagttgctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttttccaatattgtcctttccaat |
10399463 |
T |
|
| Q |
315 |
ttgagaaagtttttt-atctcttgcagcaactagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccaccacccttaatatttgatga |
413 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10399462 |
ttgagaaagtttttttatctcttgcagcaactagggtacacaaaatagcctcacaagttgtacctaataacacaccaccaccacccttaatatttgatga |
10399363 |
T |
|
| Q |
414 |
aaaaatgaaacttttgggtaaatttagcaattttccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatcca |
513 |
Q |
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| T |
10399362 |
aaaaatgaaacttttgggtaaatttagcaattttccaagccaattcataacaatagtttcaagctcagttgcagctggtgatgataaccaattgaatcca |
10399263 |
T |
|
| Q |
514 |
acaacattgaatccagtgcttaacatttcacctataaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtga |
613 |
Q |
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| T |
10399262 |
acaacattgaatccagtgcttaacatttcacctataaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtga |
10399163 |
T |
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| Q |
614 |
taccagggattatatgttgttgaacatcttcaagtattgattcaattgattctggttgaaatggagctgaagatggtaatatttttgcaagataaccagg |
713 |
Q |
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| T |
10399162 |
taccagggattatatgttgttgaacatcttcaagtattgattcaattgattctggttgaaatggagctgaagatggtaatatttttgcaagataaccagg |
10399063 |
T |
|
| Q |
714 |
ttctactt |
721 |
Q |
| |
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|||||||| |
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| T |
10399062 |
ttctactt |
10399055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 448 - 647
Target Start/End: Complemental strand, 21197804 - 21197605
Alignment:
| Q |
448 |
ccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcaccta |
547 |
Q |
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|||||||||| ||||||| | |||| || || || ||||||||||| || | ||| || |||||||||||||| |||||||||||||||||||| |||| |
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| T |
21197804 |
ccaagccaatctataacaacattttctagttctgtagcagctggtgatgaaatccagttaaatccaacaacattcaatccagtgcttaacatttctccta |
21197705 |
T |
|
| Q |
548 |
taaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaag |
647 |
Q |
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||||||||| |||||||||| || || |||||| | ||||| ||||| ||||||||| ||||| |||||||| | || |||| ||||||||| |
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| T |
21197704 |
agaaccctgctgtgctaccacttgatggaaaataagcaaagtaattaggactttgccaatgtgttatacctgggattatgtatttttgataatcttcaag |
21197605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 398
Target Start/End: Complemental strand, 21197999 - 21197845
Alignment:
| Q |
244 |
gctttttgaagtgcactatgtgtttgatcagaacaatacacaacaagttttccaatatcgtcctttccaatttgagaaagttttttatctcttgcagcaa |
343 |
Q |
| |
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|||||||||| ||||| ||||||||||||||| | ||| ||||||||||| || || || | ||||||| ||| |||||||||| ||| ||| |
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| T |
21197999 |
gctttttgaactgcacaatgtgtttgatcagagccataaacaacaagtttacctgcattttcactaccaattttgctaagaattttatctctagcaacaa |
21197900 |
T |
|
| Q |
344 |
ctagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccaccacc |
398 |
Q |
| |
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| || || | ||||||| | ||||| ||||| |||||||| |||||||||||||| |
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| T |
21197899 |
caagagttcccaaaataccttcacaggttgtgcctaataaaacaccaccaccacc |
21197845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 448 - 647
Target Start/End: Complemental strand, 11014738 - 11014539
Alignment:
| Q |
448 |
ccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcaccta |
547 |
Q |
| |
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|||||||||| ||||||| | |||| || || |||||||||||||| || | ||| || |||||||||||||| ||||||||||| || ||||| |||| |
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| T |
11014738 |
ccaagccaatctataacaacattttctagttctgttgcagctggtgatgaaatccagttaaatccaacaacattcaatccagtgctcaatatttctccta |
11014639 |
T |
|
| Q |
548 |
taaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaag |
647 |
Q |
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||||||||| |||||||||| || || |||||| | ||||||||||| ||||||||| ||||| |||||||| || | |||| ||||||||| |
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| T |
11014638 |
agaaccctgctgtgctaccacttgagggaaaataagcaaagtaatttggactttgccaatgtgttatacctgggattatgtgcttttgataatcttcaag |
11014539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 448 - 647
Target Start/End: Complemental strand, 11004410 - 11004211
Alignment:
| Q |
448 |
ccaagccaattcataacaatagtttcaagctcagttgcagctggtgaagataaccaattgaatccaacaacattgaatccagtgcttaacatttcaccta |
547 |
Q |
| |
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|||||||||| ||||||| | |||| || || || ||||||||||| || | ||| || |||||||||||||| ||||||||||| || ||||| |||| |
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| T |
11004410 |
ccaagccaatctataacaacattttctagttctgtggcagctggtgatgaaatccagttaaatccaacaacattcaatccagtgctcaatatttctccta |
11004311 |
T |
|
| Q |
548 |
taaaccctgctatgctaccactactagggaagtaagcataataatttggactcatccaatgtgtgataccagggattatatgttgttgaacatcttcaag |
647 |
Q |
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||||||||| |||||||||| || || |||||| | ||||||||||| ||||||||| ||||| |||||||| || | |||| ||||||||| |
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| T |
11004310 |
agaaccctgctgtgctaccacttgagggaaaataagcaaagtaatttggactttgccaatgtgttatacctgggattatgtgcttttgataatcttcaag |
11004211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 11004523 - 11004451
Alignment:
| Q |
326 |
ttttatctcttgcagcaactagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccaccacc |
398 |
Q |
| |
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|||||||||| ||| |||||| || | ||||||| | |||||||||||||||||||| |||||||||||||| |
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| T |
11004523 |
ttttatctctagcaacaactaaagttcccaaaataccttcacaagttgtacctaataaaacaccaccaccacc |
11004451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 11014851 - 11014779
Alignment:
| Q |
326 |
ttttatctcttgcagcaactagtgtacacaaaatagcctcacaagttgtacctaataacacaccaccaccacc |
398 |
Q |
| |
|
|||||||||| ||| |||||| || | ||||||| | |||||||||||||||||||| |||||||||||||| |
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|
| T |
11014851 |
ttttatctctagcaacaactaaagttcccaaaataccttcacaagttgtacctaataaaacaccaccaccacc |
11014779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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