View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11948_low_3 (Length: 725)
Name: NF11948_low_3
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_3 |
 | |
|
| [»] scaffold0341 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0341 (Bit Score: 610; Significance: 0; HSPs: 3)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 19 - 652
Target Start/End: Complemental strand, 12228 - 11595
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12228 |
ctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcat |
12129 |
T |
|
| Q |
119 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12128 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaa |
12029 |
T |
|
| Q |
219 |
gagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
12028 |
gagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgacattaaacaatgattcac |
11929 |
T |
|
| Q |
319 |
gaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11928 |
gaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatag |
11829 |
T |
|
| Q |
419 |
tgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11828 |
tgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcg |
11729 |
T |
|
| Q |
519 |
gtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgtt |
618 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11728 |
gtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgtt |
11629 |
T |
|
| Q |
619 |
gtaaataccagaccagattgtaattaaatagtgg |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
11628 |
gtaaataccagaccagattgtaattaaatagtgg |
11595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 192 - 652
Target Start/End: Complemental strand, 4399 - 3939
Alignment:
| Q |
192 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
291 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
4399 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
4300 |
T |
|
| Q |
292 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
391 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4299 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
4200 |
T |
|
| Q |
392 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4199 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaac |
4100 |
T |
|
| Q |
492 |
ccgccaagctcagctcaagaattatcggtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacc |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4099 |
ccgccaagctcagctcaagaattatcggtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacc |
4000 |
T |
|
| Q |
592 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
652 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3999 |
cataatacatatatatttcatagtgttgtaaataccagaccagattgtaattaaatagtgg |
3939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 4603 - 4452
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcat |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
4603 |
ctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggttcttgaaattgtaagtggtgctaaaaatagtagcat |
4504 |
T |
|
| Q |
119 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcatactttt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4503 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 562; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 19 - 652
Target Start/End: Complemental strand, 6510548 - 6509915
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510548 |
ctgagtatgtaatgcaaggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcat |
6510449 |
T |
|
| Q |
119 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatctttagaagtgaaattatatctaacaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6510448 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatctttcatgtttagaagtgaaattatatctaacaaa |
6510349 |
T |
|
| Q |
219 |
gagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcac |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| ||||||||| || | |||||||||||||||| |
|
|
| T |
6510348 |
gagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggattgatggtactgcaacaattatcatagattctactttaaacaatgattcac |
6510249 |
T |
|
| Q |
319 |
gaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatag |
418 |
Q |
| |
|
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510248 |
gaaatgaaatttttagatgtattcatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatag |
6510149 |
T |
|
| Q |
419 |
tgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510148 |
tgattctgttactctcccaatgcctttggaacctgcatttcatatggattggagtgactttcaagatacgaacccgccaagctcagctcaagaattatcg |
6510049 |
T |
|
| Q |
519 |
gtcaacggcgcttcaaacacagagctatttccttgctagctggaattttaatcattggaatgaccgtgatacccataatacatatatatttcatagtgtt |
618 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6510048 |
gtcaacggggcctcaaacacagagctatttccttgctagctggaattttaaccattggaatgaccgtgatacccataatacatatatatttcatagtgtt |
6509949 |
T |
|
| Q |
619 |
gtaaataccagaccagattgtaattaaatagtgg |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6509948 |
gtaaataccagaccagattgtaattaaatagtgg |
6509915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 30 - 467
Target Start/End: Complemental strand, 6497554 - 6497114
Alignment:
| Q |
30 |
atgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgtgatgggg |
129 |
Q |
| |
|
||||||||||| |||||||| || || ||||| || ||||| |||||||||||| | ||||| ||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
6497554 |
atgcacggacaattttcagtgaagtcggatgtattcagtttcggtatattggttcttgaaatcgtaagtggttcaaaaaacagtggcattcgcgatgagg |
6497455 |
T |
|
| Q |
130 |
agaatacagaatatctctcaagctttgtaagtcatacttttcatgtcgtc------atatctttcatctttagaagtgaaattatatctaacaaagagta |
223 |
Q |
| |
|
||||||| || ||||| || ||||||||||||||||||||| ||||| || |||| |||||| | ||||||| | ||||||||||| || | |
|
|
| T |
6497454 |
agaatactgagtatctatcgagctttgtaagtcatactttttatgtcatcgtcatcatatatttcatgt--agaagtgta-ttatatctaacctagtatt |
6497358 |
T |
|
| Q |
224 |
gtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaat |
323 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||| ||||||||| | | ||||||||||||||||||||| |
|
|
| T |
6497357 |
ttatttgcgtttggacaaatttgtgcaggcatggaggaattggaaggagggaactgcaacaagtatcatagatcccacgttaaacaatgattcacgaaat |
6497258 |
T |
|
| Q |
324 |
gaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgatt |
423 |
Q |
| |
|
||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
6497257 |
gaaatgttgagatgtatacatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggctactgtagtagtgatgctaaatagtgatt |
6497158 |
T |
|
| Q |
424 |
ctgttactctcccaatgcctttggaacctgcatttcatatggat |
467 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6497157 |
cagttactctcccaatgcctttggaacctgcatttcatatggat |
6497114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 192 - 445
Target Start/End: Complemental strand, 6502721 - 6502468
Alignment:
| Q |
192 |
tttagaagtgaaattatatctaacaaagagtagtatttgcatttgggtaaatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatca |
291 |
Q |
| |
|
|||||||||| |||||||||||||| ||| | ||| ||||| ||| |||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
6502721 |
tttagaagtggaattatatctaacatagaatgatatatgcatctggataaatttgtgtaggcatggagaaattggagagaggggactgcaacaaatatca |
6502622 |
T |
|
| Q |
292 |
tagactcgatattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcat |
391 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||| ||| |
|
|
| T |
6502621 |
tagactcgacattaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatatagtaaatagaccaaccat |
6502522 |
T |
|
| Q |
392 |
ggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgccttt |
445 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
6502521 |
ggcttctattgtagtgatgcttaatagcgactctgttactcttccaatgccttt |
6502468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 241 - 463
Target Start/End: Complemental strand, 6514690 - 6514468
Alignment:
| Q |
241 |
aatttgtgcaggcatggagaaattggaaggaagggactgcaacaaatatcatagactcgatattaaacaatgattcacgaaatgaaatactaagatgtat |
340 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| | | |||||||||||| |||| |||||| ||| | |||||||| |
|
|
| T |
6514690 |
aatttgtgtaggcatggagaaattggaaggaggggactgcagcaaatatcatagatccaacattaaacaatgactcactaaatgagataatgagatgtat |
6514591 |
T |
|
| Q |
341 |
ccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatg |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
6514590 |
ccatattggattactttgtgttcaagagaatgtagctagcagaccaaccatggcttctgttgtagtgacgcttaatagcccttctgttactctcccaatt |
6514491 |
T |
|
| Q |
441 |
cctttggaacctgcatttcatat |
463 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
6514490 |
cctttgcaacctgcatttcatat |
6514468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 6502924 - 6502773
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcat |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||| | ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
6502924 |
ctgagtatgtaatgcacggacaattttcggtaaaatcagatgtcttcagttttggtatattggttcttgaaattgtaagtggtgctaaaaatagtagcat |
6502825 |
T |
|
| Q |
119 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcatactttt |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6502824 |
tcgtgatggggagaatacagaatatctctcaagctttgtaagtcataatttt |
6502773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 36 - 187
Target Start/End: Complemental strand, 6514930 - 6514779
Alignment:
| Q |
36 |
ggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattcgtgatggggagaata |
135 |
Q |
| |
|
||||| |||||| |||||| ||||||||||||||||||||||| ||| | ||||||||||||||| ||||||| ||| ||| |||||||||||||||| |
|
|
| T |
6514930 |
ggacaattttcaacaaaatcagatgtctttagttttggtatattagttcttgaaattgtaagtggtacaaaaaatagttacatccgtgatggggagaata |
6514831 |
T |
|
| Q |
136 |
cagaatatctctcaagctttgtaagtcatacttttcatgtcgtcatatcttt |
187 |
Q |
| |
|
| ||||||||||| |||||||||||||||| || ||||| |||||||||| |
|
|
| T |
6514830 |
cggaatatctctcgagctttgtaagtcataattgtcatgcaatcatatcttt |
6514779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 302 - 434
Target Start/End: Original strand, 6525879 - 6526011
Alignment:
| Q |
302 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
401 |
Q |
| |
|
|||||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| || |
|
|
| T |
6525879 |
attaaacaatgattcagtgaacgaaataatgagatgcatccacattgggttactttgtgttcaagaaaatgcagctagcaggccaactatggcttctatt |
6525978 |
T |
|
| Q |
402 |
gtagtgatgcttaatagtgattctgttactctc |
434 |
Q |
| |
|
||| | |||||||||||| ||||| | |||||| |
|
|
| T |
6525979 |
gtactaatgcttaatagtcattctctcactctc |
6526011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 302 - 444
Target Start/End: Original strand, 47771525 - 47771667
Alignment:
| Q |
302 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
401 |
Q |
| |
|
|||||||||| |||| |||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47771525 |
attaaacaatatttcagcaaatgaaataatgagatgcatccatattggcttactttgtgttcaagaaaatgtagttgacagaccaaccatggctactgtt |
47771624 |
T |
|
| Q |
402 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
444 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47771625 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47771667 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 302 - 444
Target Start/End: Original strand, 47775677 - 47775819
Alignment:
| Q |
302 |
attaaacaatgattcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctagcaggccaagcatggcttctgtt |
401 |
Q |
| |
|
|||||||||| |||| |||||||||| | |||||||||||||||| ||||||||||||||||| ||||||| | ||| |||| ||||||| ||||| |
|
|
| T |
47775677 |
attaaacaatatttcagcaaatgaaataatgagatgtatccatattgccttactttgtgttcaagaaaatgtagttgacagaccaaccatggctgctgtt |
47775776 |
T |
|
| Q |
402 |
gtagtgatgcttaatagtgattctgttactctcccaatgcctt |
444 |
Q |
| |
|
| | | |||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
47775777 |
gcactcatgcttaatagttattctctcactctctcaatacctt |
47775819 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 6525551 - 6525657
Alignment:
| Q |
21 |
gagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggtgcaaaaaacagtggcattc |
120 |
Q |
| |
|
||||||| |||||| ||||| |||||||| || || ||||| |||||||||||| ||||| || | || ||| ||||||| |||||||||||||||| |
|
|
| T |
6525551 |
gagtatgcaatgcatggacaattttcagtgaagtcagatgtatttagttttggtgtattgattcttgagattataagtggccacaaaaacagtggcattc |
6525650 |
T |
|
| Q |
121 |
gtgatgg |
127 |
Q |
| |
|
|| |||| |
|
|
| T |
6525651 |
gtcatgg |
6525657 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 47771247 - 47771329
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggt |
101 |
Q |
| |
|
||||||||| |||||| ||||| ||||| |||||||| ||||||||||| ||||| |||||||| | || ||| |||||||| |
|
|
| T |
47771247 |
ctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagctttggggtattggttcttgagattataagtggt |
47771329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 47775345 - 47775427
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggtatattggttttagaaattgtaagtggt |
101 |
Q |
| |
|
||||||||| |||||| ||||| ||||| |||||||| |||||||||||||| || |||||||| | || ||| |||||||| |
|
|
| T |
47775345 |
ctgagtatgcaatgcatggacaattttcggtaaaatcggatgtctttagtttcggagtattggttcttgagattttaagtggt |
47775427 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 28854457 - 28854402
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt |
74 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||||| |||||||| ||||||||| |
|
|
| T |
28854457 |
ctgagtatgtaatgcatggagaattttcagtaaaatcagatgtcttcagttttggt |
28854402 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 28859844 - 28859789
Alignment:
| Q |
19 |
ctgagtatgtaatgcacggacagttttcagtaaaatccgatgtctttagttttggt |
74 |
Q |
| |
|
|||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||| |
|
|
| T |
28859844 |
ctgagtatgtaatgcatggagaattttcagtgaaatcagatgtctttagttttggt |
28859789 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 27367975 - 27367905
Alignment:
| Q |
384 |
ccaagcatggcttctgttgtagtgatgcttaatagtgattctgttactctcccaatgcctttggaacctgc |
454 |
Q |
| |
|
|||| |||||||||||||| ||| |||||||||||| ||||| || ||||| |||| |||| | ||||||| |
|
|
| T |
27367975 |
ccaaccatggcttctgttgcagtcatgcttaatagttattctcttgctctctcaataccttcgaaacctgc |
27367905 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 28843869 - 28843804
Alignment:
| Q |
314 |
ttcacgaaatgaaatactaagatgtatccatattggattactttgtgttcaagagaatgtagctag |
379 |
Q |
| |
|
|||| |||||||||| | ||||| || |||||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
28843869 |
ttcaagaaatgaaatcatgagatgcattcatattgggttactttgtgtgcaagacaatgtagctag |
28843804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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