View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11948_low_4 (Length: 540)
Name: NF11948_low_4
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 477; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Complemental strand, 8707049 - 8706565
Alignment:
| Q |
19 |
caaaggtatatctgtagttgaatcacaagaggatgcctctaatcccccaaaataatcttgaaaggtactctcgttgttgtcttcaatttcaccgttcttt |
118 |
Q |
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| T |
8707049 |
caaaggtatatctgcagttgaatcacaagaggatgcctctaatcccccaaaataatcttgaaaggtactctcgttgttgtcttcaatttcaccgttcttt |
8706950 |
T |
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| Q |
119 |
aaagattgaaaacaggtgcttccatgaacattaccatgtgttgatttcaacaattttgatgcacagtattcgcctgaactaggatgttcaagaaatgccg |
218 |
Q |
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| T |
8706949 |
aaagattgaaaacaggtgcttccatgaacattaccatgtgttgatttcaacaattttgatgcacagtattcgcctgaactaggatgttcaagaaatgccg |
8706850 |
T |
|
| Q |
219 |
ttgaagtatcaagaatatcgccacactgtaaaattgtagaagaaaataaacattatgaaagttcaatctatagcatttcaaaaggaagagaataacagcc |
318 |
Q |
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| T |
8706849 |
ttgaagtatcaagaatatcgccacactgtaaaattgtagaagaaaataaacattatgaaagttcaatctatagcatttcaaaaggaagagaataacagcc |
8706750 |
T |
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| Q |
319 |
acgtcaaagtataaagaaaagagtacttctgagtctattaaagaaaaacatcaaaactaactcaacctagatatttcatttcatccatgtactttttcac |
418 |
Q |
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| T |
8706749 |
acatcaaagtataaagaaaagagtacttctgagtctattaaagaaaaacatcaaaactaactcaacctagatatttcatttcatccatgtactttttcac |
8706650 |
T |
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| Q |
419 |
aatctataaaagaaaatcaccaagcattgctaaaatgatgtcacagcaatggatggttcactaataagagatacacactttaata |
503 |
Q |
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| T |
8706649 |
aatctataaaagaaaatcaccaagcattgctaaaatgatgtcacagcaatggatggttcactaataagagatacacactttaata |
8706565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 175 - 365
Target Start/End: Complemental strand, 8692121 - 8691930
Alignment:
| Q |
175 |
tgatgcacagtattcgcctgaactaggatgttcaagaaatgccgttgaagtatcaagaatatcgccacactgtaaaattgtagaagaaaataaacattat |
274 |
Q |
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||||||| ||||||||| ||| |||||||| |||||||| |||||||||||||| |||| || || ||||||||||||| |||||||||||||||| ||| |
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| T |
8692121 |
tgatgcatagtattcgcttgagctaggatgctcaagaaacgccgttgaagtatccagaacattgcgacactgtaaaattttagaagaaaataaacaatat |
8692022 |
T |
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| Q |
275 |
gaaagttcaatcta-tagcatttcaaaaggaagagaataacagccacgtcaaagtataaagaaaagagtacttctgagtctattaaagaaaa |
365 |
Q |
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| T |
8692021 |
gaaattccattctagtagcatttcaaaaggaagagaaaaacagctacatcacagtatgaagaaaaaagaacttctgaatgtatcaaagaaaa |
8691930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 14384633 - 14384711
Alignment:
| Q |
175 |
tgatgcacagtattcgcctgaactaggatgttcaagaaatgccgttgaagtatcaagaatatcgccacactgtaaaatt |
253 |
Q |
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| T |
14384633 |
tgatgcatagtattcgcctgaactaggatgttcaagaaaagccgttgaagtatccagaacattgccatactgtaaaatt |
14384711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 14384573 - 14384632
Alignment:
| Q |
22 |
aggtatatctgtagttgaatcacaagaggatgcctctaatcccccaaaataatcttgaaa |
81 |
Q |
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|||| |||||| |||||| ||||||||||||||||| |||||||| |||| |||| |||| |
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| T |
14384573 |
aggtttatctgcagttgagtcacaagaggatgcctccaatcccccgaaatcatctcgaaa |
14384632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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