View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11948_low_6 (Length: 485)
Name: NF11948_low_6
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 154 - 468
Target Start/End: Original strand, 29052362 - 29052672
Alignment:
| Q |
154 |
tcaatcacaaattttattgctactgtaggatttctgaattcggatacttacagattcacccaccatagtccatagcaaatatacaaattgcaaaatatat |
253 |
Q |
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| T |
29052362 |
tcaatcacaaattttattgctactgtaggatttctgaattcggatacttagagattcacc----atagtccatagcaaatatacaaattgcaaaatatat |
29052457 |
T |
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| Q |
254 |
gcctccctaaaaatacaagatgtctattgtgttagagaagcctttgggtaaaatgacatatcaactgttgatttctatatatcaggttagaaataccagt |
353 |
Q |
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| T |
29052458 |
gcctccctaaaaatacaagatgtatattgtgttagagaagccattgggtaaaatgacatatcaacttttgatttctatatatcaggttagaaataccagt |
29052557 |
T |
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| Q |
354 |
tgaagttgataacgatggttcgagagtagtgaatccaaagaaaaagcttgaagataaacatttggaaatagaatccaaagtatttatttatctttataat |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29052558 |
tgaagttgataacgatggttcgagagtagtgaatccaaagaaaaagcttgaagataaatatttggaaatagaatccaaagtatttatttatctttataat |
29052657 |
T |
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| Q |
454 |
gttttatctccttat |
468 |
Q |
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| T |
29052658 |
attttatctccttat |
29052672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 331 - 466
Target Start/End: Original strand, 29049269 - 29049404
Alignment:
| Q |
331 |
tatatcaggttagaaataccagttgaagttgataacgatggttcgagagtagtgaatccaaagaaaaagcttgaagataaacatttggaaatagaatcca |
430 |
Q |
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| T |
29049269 |
tatatcaggttagaaataccagttgaagtggataacgatggttcgagagtagtgaatccaaggaaaaagcttgaagatgaatatttggaaatagaatcca |
29049368 |
T |
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| Q |
431 |
aagtatttatttatctttataatgttttatctcctt |
466 |
Q |
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| T |
29049369 |
aggtatttatttatctttataatgttttatctcctt |
29049404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 29052230 - 29052333
Alignment:
| Q |
22 |
gaccgtgaccaaaaaataattcccagtaagcctattgatagagtgatagagatgaggcctttaaaagagtggattatgtagaattggtcagttatagatt |
121 |
Q |
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| T |
29052230 |
gaccgtgaccaaaaaataattcccagtaagcctattgatagagggatagagatgaggcctttaaaagagtggattatgtagaattggtcagttatagatt |
29052329 |
T |
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| Q |
122 |
agtc |
125 |
Q |
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|||| |
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| T |
29052330 |
agtc |
29052333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 29059008 - 29059101
Alignment:
| Q |
26 |
gtgaccaaaaaataattcccagtaagcctattgatagagtgatagagatgaggcctttaaaagagtggattatgtagaattggtcagttatagattag |
123 |
Q |
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| T |
29059008 |
gtgaccaaaaaataattacttgtaagcctattgatagagggacagagac----ccttcaaaagagtgaattatgtagaattggtcagttatagattag |
29059101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 223 - 314
Target Start/End: Original strand, 29059183 - 29059276
Alignment:
| Q |
223 |
ccatagcaaatatacaaattgcaaaatatatgcctccctaaaaa--tacaagatgtctattgtgttagagaagcctttgggtaaaatgacatat |
314 |
Q |
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||||| ||||||||||||||| |||||| || ||||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
29059183 |
ccataccaaatatacaaattgtaaaatacgtgtctccctaaaaaaatataagatacctattgtggtagagaagcctttgggtaaaatgacatat |
29059276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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