View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11948_low_9 (Length: 407)
Name: NF11948_low_9
Description: NF11948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11948_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 3 - 387
Target Start/End: Complemental strand, 9772685 - 9772303
Alignment:
| Q |
3 |
gagcagagaaatatatacatctattggatgttttttgaccagccatcaattgaatgttaacttttacaaatttaaccgataacgtaatatattattactc |
102 |
Q |
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| T |
9772685 |
gagcagagaaatata--catctattggatgttttttgaccagccatcaattgaatgttaacttttacaaatttacccgataacataatatattattactc |
9772588 |
T |
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| Q |
103 |
attagaagcaactatgaaatccattaatttgacataaggcatgattttggtgacattgtatttttgaaacactgtttattaattcagaacccccaattca |
202 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9772587 |
attaaaagcaactatgaaatccattaacttgacataaggcatgattttggtgacattgtatttttgaaacactgtttattaattcagaacccccaattca |
9772488 |
T |
|
| Q |
203 |
tctttgtgcctgttgtatactaatgtactttgtgcctgttgtataccatatttctatttgtattttctgtaaatgataactttttccatgtgtggctcat |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9772487 |
tctttgtgcctgttgtatactaatgtactttgtgcctgttgtataccatatttctatttgtattttctgtaaatgataactttttccatgtgtggctcat |
9772388 |
T |
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| Q |
303 |
aaaattagaaatgccagggtttccactttcaaattgtccagacagcattgtgtaaaccatgaaaattaagagacattgaatgtta |
387 |
Q |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9772387 |
aaaattagaagtgccagggtttccactttcgaattgtccagacagcattgtgtaaaccatgaaaattaagagacattgaatgtta |
9772303 |
T |
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