View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11949_high_1 (Length: 448)

Name: NF11949_high_1
Description: NF11949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11949_high_1
NF11949_high_1
[»] chr2 (4 HSPs)
chr2 (17-183)||(37522764-37522930)
chr2 (324-425)||(37521622-37521739)
chr2 (248-293)||(37521739-37521784)
chr2 (81-134)||(36876806-36876859)
[»] chr5 (1 HSPs)
chr5 (37-152)||(7055409-7055523)
[»] chr6 (2 HSPs)
chr6 (37-136)||(7536122-7536220)
chr6 (79-182)||(7535677-7535780)
[»] chr1 (3 HSPs)
chr1 (79-136)||(1160197-1160254)
chr1 (76-142)||(31622045-31622111)
chr1 (77-165)||(1159944-1160031)
[»] chr8 (1 HSPs)
chr8 (37-148)||(5095602-5095712)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 37522930 - 37522764
Alignment:
Q  17 acaaaccaatgattgagagggtgatgcatatgagaaaacattgagcaatttttaaagccattgataaatattttgataatgatctgaatattatgaagga 116  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37522930 acaaaccaatgatagagagggtgatgcatataagaaaacattgaaatttttttaaagccattgataaatattttgataatgatctgaatattatgaagga 37522831  T
Q  117 aggtgaaatatttatagaatagatttcgtaaaatgtttgttcttgttacagttattattaccgttac 183  Q
    ||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||| ||||    
T  37522830 aggtgaaatatttatagaataaattttgtaaagtgtttgttcttgttacagttattattaccattac 37522764  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 324 - 425
Target Start/End: Complemental strand, 37521739 - 37521622
Alignment:
Q  324 ccaacctctgaaatcaaattgcgtcctctccacctcat----------------ccgtagtctcggtcttctcttcccacagcctccgccaccaccatct 407  Q
    ||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||| |||||||||||    
T  37521739 ccaacctctgaaatcaaattgcgtcctctccacctcatttttcattctctgaaaccgtagtctcggtcttctcttcccacagcctccggcaccaccatct 37521640  T
Q  408 tttctcccaccacaacca 425  Q
    ||||||||||||||||||    
T  37521639 tttctcccaccacaacca 37521622  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 293
Target Start/End: Complemental strand, 37521784 - 37521739
Alignment:
Q  248 tgcaattttaaacatactattatttacaccacctttttaggtgtac 293  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||    
T  37521784 tgcaattttaaaaatactattattcacaccacctttttaggtgtac 37521739  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 36876806 - 36876859
Alignment:
Q  81 taaatattttgataatgatctgaatattatgaaggaaggtgaaatatttataga 134  Q
    |||||||||||| |||||| |||| |||||||| ||| ||||| ||||||||||    
T  36876806 taaatattttgagaatgatgtgaaaattatgaatgaatgtgaagtatttataga 36876859  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 7055409 - 7055523
Alignment:
Q  37 gtgatgcatatgagaaaacattgagcaatttttaaagccattgataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaat 136  Q
    ||||||||||| |||||| ||| ||  ||||| ||||  ||||||||||||| ||| |||||| |||| |||||||| ||||||||| ||||||||||||    
T  7055409 gtgatgcatataagaaaatatttagtcattttgaaagt-attgataaatattctgagaatgatgtgaaaattatgaatgaaggtgaagtatttatagaat 7055507  T
Q  137 agatttcgtaaaatgt 152  Q
    |||||| |||||||||    
T  7055508 agattttgtaaaatgt 7055523  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 7536220 - 7536122
Alignment:
Q  37 gtgatgcatatgagaaaacattgagcaatttttaaagccattgataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaat 136  Q
    ||||||||||| |||||||||| | | ||||| ||||| ||| ||||||||| | |||||||| |||| |||||||| |||||| || ||||||||||||    
T  7536220 gtgatgcatataagaaaacatttaactattttaaaagc-attaataaatattctcataatgatgtgaagattatgaatgaaggtaaagtatttatagaat 7536122  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 79 - 182
Target Start/End: Original strand, 7535677 - 7535780
Alignment:
Q  79 gataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaatagatttcgtaaaatgtttgttcttgttacagttattattacc 178  Q
    |||||||||| | | |||||| |||| |||||||| |||||||||||||||||| ||| ||||| ||||| |||  |||  |||||| |||| | |||||    
T  7535677 gataaatattctaagaatgatatgaaaattatgaatgaaggtgaaatatttatataatggattttgtaaagtgtcggttactgttaccgttaatgttacc 7535776  T
Q  179 gtta 182  Q
    ||||    
T  7535777 gtta 7535780  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 1160254 - 1160197
Alignment:
Q  79 gataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaat 136  Q
    |||||||||||||| || ||| |||| |||||||| ||||||| ||||||||||||||    
T  1160254 gataaatattttgagaacgatgtgaaaattatgaatgaaggtggaatatttatagaat 1160197  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 31622045 - 31622111
Alignment:
Q  76 attgataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaatagattt 142  Q
    |||||||||||||| || |||||| |||| |||||||| ||  |||||||||||||| ||| |||||    
T  31622045 attgataaatatttcgagaatgatgtgaaaattatgaatgagagtgaaatatttataaaatggattt 31622111  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 1159944 - 1160031
Alignment:
Q  77 ttgataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaatagatttcgtaaaatgtttgttcttgttac 165  Q
    |||||||||||||||| |||||| |||| |||||||| ||||| | | ||||||| || || ||||  |||| |||||||| |||||||    
T  1159944 ttgataaatattttgaaaatgatgtgaaaattatgaacgaagg-ggagtatttattgagtaaattttataaagtgtttgttattgttac 1160031  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 5095712 - 5095602
Alignment:
Q  37 gtgatgcatatgagaaaacattgagcaatttttaaagccattgataaatattttgataatgatctgaatattatgaaggaaggtgaaatatttatagaat 136  Q
    ||||||||||| |||||| ||| ||  ||||| ||||  ||||||||||||| ||| |||||| |||| ||||| || |||| | || |||||| |||||    
T  5095712 gtgatgcatataagaaaatatttagtcattttaaaagt-attgataaatattctgagaatgatgtgaaaattataaatgaagataaattatttacagaat 5095614  T
Q  137 agatttcgtaaa 148  Q
    |||||| |||||    
T  5095613 agattttgtaaa 5095602  T

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