View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11949_low_2 (Length: 433)
Name: NF11949_low_2
Description: NF11949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11949_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 26 - 428
Target Start/End: Original strand, 25499007 - 25499409
Alignment:
| Q |
26 |
gaattttgtaagcaaagaatgaagagattttatactatggtttttgtattagtgggtggtacagctatgacatgagaaagagaatcttctcaccattcta |
125 |
Q |
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| T |
25499007 |
gaattttgtaagcaaagaatgaagagattttatactatggtttttgtattagtgggtggtacagctatgacatgagaaagagaatcttctcaccattcta |
25499106 |
T |
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| Q |
126 |
aaagcacaaggtagactatgataatcatggagccattgacaattatgtgaagtcttgaaaagggaaaattatttatcctttggaaatgatttggagttgg |
225 |
Q |
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| T |
25499107 |
aaagcacaaggtagactatgataatcatggagccattgacaattatgtgaagtcttgaaaagggaaaattatttatcctttggaaatgatttggagttgg |
25499206 |
T |
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| Q |
226 |
tgtttcttgtgtacttcaatgattataagagttttactacttgcctacacaacaagtnnnnnnnnggtatgataaaaagaaaattggtaatctatctgca |
325 |
Q |
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| T |
25499207 |
tgtttcttgtgtacttcaatgattataagagttttactacttgcctacacaacaagtaaaaaaaaggtatgataaaaagaaaattggtaatttaattgca |
25499306 |
T |
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| Q |
326 |
ttcagatgagatgattcaggtctcttttaacttaaccaaaagttttaagttcgaatataactttgagaatatagtaacgttaaaactcttgagtgggagt |
425 |
Q |
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| T |
25499307 |
ttcagatgagatgattcaggtctcttttaacttaaccaaaaatttaaagttcgaacacaactttgagaatatagtaacgttaaaactcttgagagggagt |
25499406 |
T |
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| Q |
426 |
ttt |
428 |
Q |
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| T |
25499407 |
ttt |
25499409 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 5052822 - 5052769
Alignment:
| Q |
329 |
agatgagatgattcaggtctcttttaacttaaccaaaagt-tttaagttcgaat |
381 |
Q |
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| T |
5052822 |
agatgagatgattcaagtctcttctaacttaaccaattgtctttaagttcgaat |
5052769 |
T |
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