View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11949_low_3 (Length: 336)
Name: NF11949_low_3
Description: NF11949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11949_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 10558462 - 10558137
Alignment:
| Q |
1 |
cctcccagggcatgtacaccgcgcctatgacatgtcctaatgagaaggtctgagtagctcttcatgaagtgttgactcatgccaacttggacccgatccg |
100 |
Q |
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| T |
10558462 |
cctcccatggcatgtacaccgcgcctatgacatgtcctaatgagaaggtctgagtagctcttcatgaagtgttgactcatgccaacttggacccgatccg |
10558363 |
T |
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| Q |
101 |
gtagcaacctatccggatgagcatggaaggtcttaacataactgaaaatgtaatcccaacggccacagttgagaccaacagagtgatctctgagctcata |
200 |
Q |
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| T |
10558362 |
gtagcaacctatccggatgagcatggaaggtcttaacataactgaaaatgtaatcccaacggccacagttgagaccaacagagtgatctctgagctcata |
10558263 |
T |
|
| Q |
201 |
cagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttctctgccttctcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558262 |
cagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttctctgccttctcg |
10558163 |
T |
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| Q |
301 |
aatactttgttccatatctctgcttc |
326 |
Q |
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||||||||||||||||||| |||||| |
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| T |
10558162 |
aatactttgttccatatctttgcttc |
10558137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 319
Target Start/End: Complemental strand, 10560372 - 10560244
Alignment:
| Q |
190 |
ctgagctcatacagaatttcatccatttgaaacactgcaggaagtgtttcaatcaaaactgtggctcttatgcttcctctttcaatgcctgtcatcttct |
289 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||||||| | |||||| || ||||| |
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| T |
10560372 |
ctgagctcatacaaaatttcatccatttgaaacactgcaggaagtgtttcaatcagaacagcggctc-tatgcttcctcttttagtgcctgccaacttct |
10560274 |
T |
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| Q |
290 |
ctgccttctcgaatactttgttccatatct |
319 |
Q |
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| T |
10560273 |
ctgccttctcaaacactttgttccatatct |
10560244 |
T |
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