View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11949_low_5 (Length: 265)
Name: NF11949_low_5
Description: NF11949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11949_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 37521532 - 37521301
Alignment:
| Q |
1 |
aaaatgggtagttcctttgaacgaagtttccaagcaactctgggcttgtttcaacaatcgaacaacatattcatcatgctctccttctcatgtataaaat |
100 |
Q |
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| T |
37521532 |
aaaatgggtagttcctttgaacgaagtttccaagcaactctgggcttgtttcaacaatcgaacaacatattcatcatgctctccttctcctgtataaaat |
37521433 |
T |
|
| Q |
101 |
atattcgtaagttttcatagttctgtatattttactgaaaacact---gtcctaattgagtatttataaatgctactcagatagcccaatgcttatttat |
197 |
Q |
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| T |
37521432 |
atattcgtaagttttcatagttctgtatattttactgaaaacactaaagtcctaattgagtattgataaatgctactcagatagcccaatgcttatttat |
37521333 |
T |
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| Q |
198 |
taagaaattgacattttttcacctaccaataa |
229 |
Q |
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| T |
37521332 |
taagaaattgacattttttcacctaccaataa |
37521301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 37520883 - 37520854
Alignment:
| Q |
229 |
agctattctctgatgcataaattctctgct |
258 |
Q |
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| T |
37520883 |
agctattctctgatgcataaattctctgct |
37520854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 26374668 - 26374732
Alignment:
| Q |
25 |
agtttccaagcaactctgggcttg-tttcaacaatcgaacaacatattcatcatgctctccttct |
88 |
Q |
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|||||| ||||||||| ||||| ||||||||||||| ||||||||| |||||||||||||||| |
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| T |
26374668 |
agtttcgaagcaactccgggctcaatttcaacaatcgagcaacatatttatcatgctctccttct |
26374732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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