View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1194_high_10 (Length: 260)
Name: NF1194_high_10
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_high_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 40909287 - 40909157
Alignment:
| Q |
121 |
ctctcgattcaggattaatgtcaagtatttaaaagaacgactacttttaaaccctttttgattcagtaataaaagaatattcaagagaacaacaatctta |
220 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40909287 |
ctctcggttcaggattaatgtcaagtatttaagagaacggctacttttaaaccctttttgattcagtaataaaagaatattcaagagaacaacaatctta |
40909188 |
T |
|
| Q |
221 |
tgtcattgacatttatccctgtaagaataat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
40909187 |
tgtcattgacatttatccctgtaagaataat |
40909157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 1380230 - 1380179
Alignment:
| Q |
184 |
cagtaataaaagaatattcaagagaacaacaatcttatgtcattgacattta |
235 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
1380230 |
cagtaatataagaatatttaagagaacaacaatcttacgtcattgtcattta |
1380179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 7313405 - 7313354
Alignment:
| Q |
184 |
cagtaataaaagaatattcaagagaacaacaatcttatgtcattgacattta |
235 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
7313405 |
cagtaatataagaatatttaagagaacaacaatcttacgtcattgtcattta |
7313354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 138 - 251
Target Start/End: Complemental strand, 3082508 - 3082395
Alignment:
| Q |
138 |
atgtcaagtatttaaaagaacgactacttttaaaccctttttgattcagtaataaaagaatattcaagagaacaacaatcttatgtcattgacatttatc |
237 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3082508 |
atgtcaagtatttaagagaacaactacttttaaaccctttttgattcagtaataaaagaatattcaagagaacaacaatcttatgtcattgacatttatc |
3082409 |
T |
|
| Q |
238 |
cctgtaagaataat |
251 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
3082408 |
cctgtaagaataat |
3082395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 6606479 - 6606408
Alignment:
| Q |
183 |
tcagtaataaaagaatattcaagagaacaacaatc---ttatgtcattgacatttatccctgtaagaataat |
251 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
6606479 |
tcagtaatataagaatatttaagagaacaacaatcttattatgtcattgacatttacccctgtaagaataat |
6606408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University