View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1194_high_4 (Length: 437)

Name: NF1194_high_4
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1194_high_4
NF1194_high_4
[»] chr7 (2 HSPs)
chr7 (53-281)||(47544515-47544743)
chr7 (58-410)||(47528411-47528771)
[»] chr4 (1 HSPs)
chr4 (299-388)||(45123765-45123854)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 53 - 281
Target Start/End: Original strand, 47544515 - 47544743
Alignment:
Q  53 aatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaac 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47544515 aatataacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaac 47544614  T
Q  153 ttgttatagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcgg 252  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||| |||||||||| |||||||||||||||||| ||    
T  47544615 ttgttatagaaacctactacttggatcaatactctctccaaaccggaatgccttaagcttacgcagtcagaacatcggagactacttagattaagtttgg 47544714  T
Q  253 atgatcgagattcaacctcggtgcattga 281  Q
    |||||||||||||||||||||||||||||    
T  47544715 atgatcgagattcaacctcggtgcattga 47544743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 58 - 410
Target Start/End: Original strand, 47528411 - 47528771
Alignment:
Q  58 aacaattctgctgttgagaacagaatattaaacgctgattttgaaacaataaaagcgaaggtaagtccttgatttaactactttactagtaaaacttgtt 157  Q
    ||||||||||||||||| |||||||||||||| |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  47528411 aacaattctgctgttgacaacagaatattaaaagctgatgttgaaacattaagagcgaaggtaagtccttgatttaactactttactagtaaaactggtt 47528510  T
Q  158 atagaaacctactacttggatcaatactctctgcaaaccgaaatgccttaagcttacacagttagaacatcggtgactacttagattaagttcggatgat 257  Q
    |||||| ||||||||||||||||| | |||||||||   | |||||||| || |||| |||| || |||| ||||||||||||||||||| ||||||| |    
T  47528511 atagaagcctactacttggatcaaaattctctgcaatttg-aatgccttgagtttacgcagtcagcacattggtgactacttagattaagatcggatgct 47528609  T
Q  258 cgagattcaacctcggtgcatt----------gaagaatcaaaatcaggcttattttgtgaactatccgatctgaatccaatatcaaccaatgcactgac 347  Q
     |||||||||||||||||| ||          ||||||||| ||||   ||||||||||||| | ||||||||||||||| ||  | ||| ||||||||     
T  47528610 tgagattcaacctcggtgctttggattttcaagaagaatcagaatc-ttcttattttgtgaaatgtccgatctgaatccagtagtagccattgcactgat 47528708  T
Q  348 tgcgtgaatgcagcaatattccaactggaaggaatccattttcaattgatacatgtgtatttg 410  Q
    ||||||||| |||| ||||||||||| |||||||||||||| ||||||||  |||||||||||    
T  47528709 tgcgtgaatccagcgatattccaactagaaggaatccatttccaattgatttatgtgtatttg 47528771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 388
Target Start/End: Complemental strand, 45123854 - 45123765
Alignment:
Q  299 tattttgtgaactatccgatctgaatccaatatcaaccaatgcactgactgcgtgaatgcagcaatattccaactggaaggaatccattt 388  Q
    ||||||||||||||||||||| |||||||||    ||||||||| ||||  ||||||||||| |||||  ||| || |||| ||||||||    
T  45123854 tattttgtgaactatccgatccgaatccaatggtcaccaatgcattgacaacgtgaatgcaggaatatctcaattgtaaggtatccattt 45123765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University