View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1194_high_7 (Length: 371)
Name: NF1194_high_7
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 30 - 367
Target Start/End: Complemental strand, 46527337 - 46527000
Alignment:
| Q |
30 |
tcaatcatgttttctcctattaagcagcgtgagtaatacatttgccagagtaaaaagcagggaaacaagttgtaatcaacgtaccaaaggtatatgatct |
129 |
Q |
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| T |
46527337 |
tcaatcatgttttctcctattaagcagcgtgagtaatacatttgccagagtaaaaagcagggaaacaagttgtaatcaacgtaccaaaggtatatgatct |
46527238 |
T |
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| Q |
130 |
ttgtacaggtgcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagta |
229 |
Q |
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| T |
46527237 |
ttgtacaggtgcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagta |
46527138 |
T |
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| Q |
230 |
ccagtaattgttagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggcttgtagtagcatttaaa |
329 |
Q |
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| T |
46527137 |
ccagtaattgttagatgcctcaatttaaggcttttgttttgcttctacagggcatacgaacgaggtagtagctagtagtaggcttgtagtagcatttaaa |
46527038 |
T |
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| Q |
330 |
tttactgcatagtgcattacctcatctctctgctcctc |
367 |
Q |
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| T |
46527037 |
tttactgcatagtgcattacctcatctctttgttcctc |
46527000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 140 - 232
Target Start/End: Complemental strand, 3441339 - 3441248
Alignment:
| Q |
140 |
gcagcaggcctatcctaaacctaccaccgtggcagtatccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtacca |
232 |
Q |
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| T |
3441339 |
gcagcaggcgaatcctaaccctaccacattggcagtatccataattgaatttaaaacatgtatggacaattcac-ttgggtgattcagtacca |
3441248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 261
Target Start/End: Complemental strand, 3450472 - 3450391
Alignment:
| Q |
176 |
atccagaattgaatttaaagcatgtatggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaatttaaggct |
261 |
Q |
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| T |
3450472 |
atccataattgaatttaaaacatgtatgtacaaatcaca-tgggtgattcagtacc---aattgttagatgcctcaacttatggct |
3450391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 174 - 256
Target Start/End: Complemental strand, 3576510 - 3576426
Alignment:
| Q |
174 |
gtatccagaattgaatttaaa-gcatgtat-ggacaagtcacattgtgtgattcagtaccagtaattgttagatgcctcaattta |
256 |
Q |
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| T |
3576510 |
gtatccatacttgaatttaaaagcatgtataggacaagtcacattgggtgattcaataccaacaactgttagatgcctcaattta |
3576426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 3567151 - 3567103
Alignment:
| Q |
235 |
aattgttagatgcctcaatttaaggcttttgttttgcttctacagggca |
283 |
Q |
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| T |
3567151 |
aattgttagatgcctcaatttatggcttttgttttgcttccacacggca |
3567103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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