View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1194_low_10 (Length: 379)
Name: NF1194_low_10
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 29 - 367
Target Start/End: Original strand, 44996899 - 44997234
Alignment:
| Q |
29 |
agtaaagaggagaaacaacctttctaaatgctaatagatcagcaaatggtgatgcattgcaatgtttgtatcctttcttcatccaaccaagtttactgca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44996899 |
agtaaagaggagaaacaacctttctaaatgctaatagatcagcaaatggtgatgcattgcaatgtttgtatcctttcttcatccaaccaagtttactgca |
44996998 |
T |
|
| Q |
129 |
taaaaatataggtgtgcaatggaaatattacattagaccaaaatccatataattgtcagttgtcacatatttatacaagtatagaatagcaacttaatta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44996999 |
taaaaatataggtgtgcaatggaaatattacattagaccaaaatccatataactgtcagttgtcacatatttatacaagtatagaatagcaactta---a |
44997095 |
T |
|
| Q |
229 |
ttaccgtttgtagagcatgccaaaaactgttcttctaactggattgagctcttccactgctttcttgatacctgaaacatataatcttgaatgagttatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44997096 |
ttaccgtttgtagagcatgccaaaaactgttcttctaactggattgagctcttccactgctttcttgatacctgaaacatataatcttgaatgagttatg |
44997195 |
T |
|
| Q |
329 |
tactaaattgtaatgaaataaataatttttgtgcagaat |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44997196 |
tactaaattgtaatgaaataaataatttttgtgcagaat |
44997234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 236 - 307
Target Start/End: Complemental strand, 38767342 - 38767271
Alignment:
| Q |
236 |
ttgtagagcatgccaaaaactgttcttctaactggattgagctcttccactgctttcttgatacctgaaaca |
307 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| || | | |||||||||||||||||||| ||||| |
|
|
| T |
38767342 |
ttgtagagcatgccaaaaactgttctcctcactggatttagttgtgccactgctttcttgatacctaaaaca |
38767271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University