View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1194_low_15 (Length: 324)
Name: NF1194_low_15
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 38825087 - 38825218
Alignment:
| Q |
53 |
aatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaac-----------atcacccaaatcttttacatctaac |
141 |
Q |
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| T |
38825087 |
aatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaacaaacgaaacatatcacccaaatcttttacatataac |
38825186 |
T |
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| Q |
142 |
catttaccccattcttgatcaagcttatatac |
173 |
Q |
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| T |
38825187 |
catttaccccattcttgatcaagcttatatac |
38825218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 170
Target Start/End: Original strand, 38813168 - 38813314
Alignment:
| Q |
32 |
ttcacaatagaagtagatgcaaatttccttcacatccgtaataatctcgagccaacaatgcaaagtttgagtctttacccaaaac---------atcacc |
122 |
Q |
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| T |
38813168 |
ttcataatagaagtagatgcagttttc-ttcacacccatagtaatctcgagccaacaatgcaaaatttgtgtctttatccaaaacaaacgaaacatcacc |
38813266 |
T |
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| Q |
123 |
caaatcttttacatctaaccatttaccccattcttgatcaagcttata |
170 |
Q |
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| T |
38813267 |
caaatcttttacttttaaccatttaccccattcttgatcaagcttata |
38813314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 38823671 - 38823717
Alignment:
| Q |
1 |
aattctccaagttgaaacaataagtcttgtcttcacaatagaagtag |
47 |
Q |
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| T |
38823671 |
aattctccaagttgaaacaataagtcctgtcttcacaatagaagtag |
38823717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35521228 - 35521051
Alignment:
| Q |
1 |
aattctccaagttgaaacaataagtcttgtcttcacaatagaagtagatgcaaatttccttcacatccgtaataatctcgagccaacaatgcaaagtttg |
100 |
Q |
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| T |
35521228 |
aattcttcaagttgaaacaagaagccttgtgatcaaaatagaaatagatgcaa-tttccttcaaatccataataatcttgagctaacaatgcaaagtttg |
35521130 |
T |
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| Q |
101 |
agtctttaccca---------aaacatcacccaaatcttttacatctaaccatttaccccattcttgatcaagcttata |
170 |
Q |
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| T |
35521129 |
agtctttactcaaaacaaatgaaacatcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttata |
35521051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 35548428 - 35548605
Alignment:
| Q |
1 |
aattctccaagttgaaacaataagtcttgtcttcacaatagaagtagatgcaaatttccttcacatccgtaataatctcgagccaacaatgcaaagtttg |
100 |
Q |
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|||||||||| ||||||||||| | |||| ||| | || ||| ||| |||||| |||| || |||||| ||||| ||| |||| | ||||| |||||||| |
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| T |
35548428 |
aattctccaaattgaaacaataggccttgcctttagaaaagaggtaaatgcaa-tttctttgacatccataatagtcttgagctatcaatgaaaagtttg |
35548526 |
T |
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| Q |
101 |
agtctttacccaaaaca---------tcacccaaatcttttacatctaaccatttaccccattcttgatcaagcttata |
170 |
Q |
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||||| ||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
35548527 |
agtctctacccaaaacaaacaaagcttcacccagatctggcacatcaaaccatttaccccattcttgatcaagcttata |
35548605 |
T |
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