View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1194_low_16 (Length: 323)

Name: NF1194_low_16
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1194_low_16
NF1194_low_16
[»] chr3 (12 HSPs)
chr3 (83-231)||(14746041-14746189)
chr3 (184-229)||(47677523-47677568)
chr3 (183-241)||(9831262-9831320)
chr3 (104-231)||(43453439-43453566)
chr3 (183-231)||(15287567-15287615)
chr3 (184-231)||(20807937-20807984)
chr3 (183-230)||(54308454-54308501)
chr3 (184-230)||(9830573-9830619)
chr3 (194-231)||(55338-55375)
chr3 (182-231)||(43454160-43454209)
chr3 (187-232)||(53344016-53344061)
chr3 (95-151)||(35982575-35982631)
[»] chr7 (16 HSPs)
chr7 (83-231)||(767866-768014)
chr7 (182-231)||(33261412-33261461)
chr7 (182-233)||(24874577-24874628)
chr7 (92-151)||(27917775-27917834)
chr7 (92-231)||(767136-767275)
chr7 (182-232)||(41965111-41965161)
chr7 (187-232)||(9147101-9147146)
chr7 (182-231)||(41965776-41965825)
chr7 (187-225)||(7329072-7329110)
chr7 (186-232)||(46491691-46491737)
chr7 (189-234)||(2403447-2403492)
chr7 (184-233)||(28007155-28007204)
chr7 (183-231)||(3314955-3315003)
chr7 (184-232)||(3849596-3849644)
chr7 (195-231)||(17114145-17114181)
chr7 (187-231)||(42818557-42818601)
[»] chr5 (11 HSPs)
chr5 (269-323)||(24288344-24288398)
chr5 (269-323)||(24373824-24373878)
chr5 (182-232)||(35524121-35524171)
chr5 (183-231)||(39937906-39937954)
chr5 (184-231)||(24565573-24565620)
chr5 (184-231)||(24606609-24606656)
chr5 (183-232)||(16195129-16195178)
chr5 (182-231)||(23253485-23253534)
chr5 (194-231)||(27345930-27345967)
chr5 (186-231)||(40372163-40372208)
chr5 (182-234)||(38406397-38406449)
[»] chr4 (15 HSPs)
chr4 (92-165)||(45140520-45140593)
chr4 (187-234)||(34941499-34941546)
chr4 (183-233)||(26354232-26354282)
chr4 (186-231)||(21280035-21280080)
chr4 (184-232)||(24666853-24666901)
chr4 (187-231)||(52129421-52129465)
chr4 (184-231)||(25055109-25055156)
chr4 (184-250)||(24666110-24666176)
chr4 (182-231)||(13924793-13924842)
chr4 (183-232)||(14527576-14527625)
chr4 (182-227)||(18363652-18363697)
chr4 (92-234)||(21281070-21281212)
chr4 (182-227)||(36599231-36599276)
chr4 (183-231)||(6056999-6057047)
chr4 (182-230)||(53777822-53777870)
[»] chr1 (12 HSPs)
chr1 (184-233)||(26240872-26240921)
chr1 (182-233)||(5491335-5491386)
chr1 (92-231)||(13416244-13416383)
chr1 (189-231)||(16449555-16449597)
chr1 (189-231)||(16459129-16459171)
chr1 (184-233)||(26240112-26240161)
chr1 (186-231)||(31109239-31109284)
chr1 (186-231)||(31116687-31116732)
chr1 (182-230)||(4060049-4060097)
chr1 (184-232)||(24848427-24848475)
chr1 (194-234)||(27745553-27745593)
chr1 (99-151)||(31109319-31109371)
[»] chr8 (13 HSPs)
chr8 (184-233)||(22632969-22633018)
chr8 (194-231)||(33322214-33322251)
chr8 (184-232)||(42663998-42664046)
chr8 (189-232)||(202576-202619)
chr8 (189-232)||(317413-317456)
chr8 (184-230)||(22632323-22632369)
chr8 (182-232)||(26847096-26847146)
chr8 (182-231)||(5434032-5434081)
chr8 (182-231)||(26132132-26132181)
chr8 (182-231)||(36403024-36403073)
chr8 (183-231)||(4402287-4402335)
chr8 (183-231)||(19220913-19220961)
chr8 (183-231)||(26847721-26847769)
[»] chr2 (5 HSPs)
chr2 (187-231)||(18537497-18537541)
chr2 (183-231)||(44296860-44296908)
chr2 (183-234)||(20606921-20606972)
chr2 (189-233)||(127741-127785)
chr2 (197-237)||(6873516-6873556)
[»] scaffold0627 (1 HSPs)
scaffold0627 (183-233)||(6462-6512)
[»] chr6 (3 HSPs)
chr6 (182-232)||(2138476-2138526)
chr6 (92-162)||(10965299-10965369)
chr6 (182-231)||(10966379-10966428)


Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 83 - 231
Target Start/End: Complemental strand, 14746189 - 14746041
Alignment:
Q  83 cataggctgaggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcatcgagtggcgnnnnnnnc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||       |    
T  14746189 cataggctgaggataagattaaatgtgagtagccgtatatgtttccatttttaatttaaataaatctgatccatctatttcatctagtggcgtttttttc 14746090  T
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| | ||||||  |||||| ||||||| |||||||||||||    
T  14746089 gtggtccaccggggagggatttaattggaccctcaccctagaatccacc 14746041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 47677568 - 47677523
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatcca 229  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||    
T  47677568 tggttcaccagtgagggacttaattgaaccctcatcctagaatcca 47677523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 9831262 - 9831320
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacctatcttataa 241  Q
    |||||||||||||||||||| |||||| ||||||| || |||||||||| || ||||||    
T  9831262 gtggtccaccagtgagggacttaattggaccctcaccccagaatccaccaattttataa 9831320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 43453566 - 43453439
Alignment:
Q  104 aatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcatcgagtggcgnnnnnnncgtggtccaccagtgagggaca 203  Q
    |||||||||||  ||| ||||||||| ||||||||||||||||| ||| | |||||||| ||| | |||         ||||||||| | ||||||||      
T  43453566 aatgtgagtagttgtacatgttcccaattttaatttaaataaatttgaaccatctatttaatctattggtatttttctcgtggtccagcggtgagggatt 43453467  T
Q  204 taattgaaccctcatcctagaatccacc 231  Q
    |||||| ||||||| |||||||||||||    
T  43453466 taattggaccctcaccctagaatccacc 43453439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 15287615 - 15287567
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  15287615 gtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 20807984 - 20807937
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||| |||| ||||||||| |||||||||||||| |||||||||||||    
T  20807984 tggtacaccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 54308501 - 54308454
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccac 230  Q
    ||||| |||| ||||||||| |||||||||||||| ||||||||||||    
T  54308501 gtggttcaccggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 9830619 - 9830573
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccac 230  Q
    ||||||||| ||||||||| |||||||||||||| || |||||||||    
T  9830619 tggtccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 55338 - 55375
Alignment:
Q  194 gtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  55338 gtgagggacttaattgaaccctcatcctagaattcacc 55375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 43454160 - 43454209
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||  ||||||||| |||||| ||||||| |||||||||||||    
T  43454160 cgtggtccacaggtgagggacctaattggaccctcaccctagaatccacc 43454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 53344061 - 53344016
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||||| ||||||||| | ||||| |||||||||||||||||||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacct 53344016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 35982631 - 35982575
Alignment:
Q  95 ataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctga 151  Q
    |||||||| |||||||||||  ||||||||| | ||||||||||  |||||||||||    
T  35982631 ataagattgaatgtgagtagttgtatatgtttctatttttaattcgaataaatctga 35982575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 767866 - 768014
Alignment:
Q  83 cataggctgaggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcatcgagtggcgnnnnnnnc 182  Q
    |||||| ||||||||||||||||||| |||||  |||||||||  ||||||||||||||||||| |||||| |||||||| ||| | | |         |    
T  767866 cataggatgaggataagattaaatgtaagtagttgtatatgttttcatttttaatttaaataaacctgatccatctattttatctacttgtatttttttc 767965  T
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| ||||||||| |||||| ||||||| |||| ||||||||    
T  767966 gtggtccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 33261412 - 33261461
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||||||||    
T  33261412 cgtggtccatcagtgagggacttaattggaccctcatcctagaatccacc 33261461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 24874577 - 24874628
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    |||||||||||  |||||||| |||||||||||||| |||||||||||||||    
T  24874577 cgtggtccaccgatgagggacctaattgaaccctcaccctagaatccaccta 24874628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 27917834 - 27917775
Alignment:
Q  92 aggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctga 151  Q
    ||||||||||| ||||||| |||  ||||||||||| ||||||||||| |||||||||||    
T  27917834 aggataagattgaatgtgaatagttgtatatgttcctatttttaatttgaataaatctga 27917775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 767275 - 767136
Alignment:
Q  92 aggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcatcgagtggcgnnnnnnncgtggtccac 191  Q
    |||||| |||| |||||||||||  ||||||||| ||||||||||||  ||||||||||| | || ||||| ||| |  || |       | || |||||    
T  767275 aggataggattgaatgtgagtagttgtatatgtttccatttttaattcgaataaatctgaaccatgtatttaatctaacggtgtttttttcatgatccac 767176  T
Q  192 cagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    | ||||||||| |||||| ||||||| |||||||||||||    
T  767175 cggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 41965161 - 41965111
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||||||||    
T  41965161 cgtggtccaccaatgagggacttaattggaccctcaccctagaatccacct 41965111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 232
Target Start/End: Complemental strand, 9147146 - 9147101
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||||||||||||||| || ||||||||||||| ||||||||||||    
T  9147146 tccaccagtgagggacctagttgaaccctcatcttagaatccacct 9147101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 41965776 - 41965825
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  41965776 cgtggtccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 7329072 - 7329110
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaa 225  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  7329072 tccaccagtgagggacttaattgaaccctcaccctagaa 7329110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 46491691 - 46491737
Alignment:
Q  186 gtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||||| ||||||||| || ||||||||||| ||||||||||||||    
T  46491691 gtccaccggtgagggacttagttgaaccctcaccctagaatccacct 46491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 2403447 - 2403492
Alignment:
Q  189 caccagtgagggacataattgaaccctcatcctagaatccacctat 234  Q
    |||| ||||||||| || |||||||||||||||||||| |||||||    
T  2403447 caccggtgagggacttagttgaaccctcatcctagaattcacctat 2403492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 28007204 - 28007155
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    ||||||||| ||||||||| ||||||  |||||| |||||||||||||||    
T  28007204 tggtccaccggtgagggacttaattgctccctcaccctagaatccaccta 28007155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 3315003 - 3314955
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||| |||| ||||||||| |||||||||||||| | |||||||||||    
T  3315003 gtggtacaccggtgagggacttaattgaaccctcaccgtagaatccacc 3314955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 3849644 - 3849596
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||||||| ||||||||  | ||||| |||||||||||||||||||||    
T  3849644 tggtccaccggtgagggatttgattgatccctcatcctagaatccacct 3849596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 17114181 - 17114145
Alignment:
Q  195 tgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||| |||||||||||||| |||||||||||||    
T  17114181 tgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||| ||||||||| |||||||||||||| |||||||| ||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 24288344 - 24288398
Alignment:
Q  269 ttttaattctttaaaaacattaggctatcagatgcctttgttcagttttgcttta 323  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  24288344 ttttaattctttaaaaacattaggctatcggatgcatttgttcagttttgcttta 24288398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 269 - 323
Target Start/End: Complemental strand, 24373878 - 24373824
Alignment:
Q  269 ttttaattctttaaaaacattaggctatcagatgcctttgttcagttttgcttta 323  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  24373878 ttttaattctttaaaaacattaggctatcggatgcatttgttcagttttgcttta 24373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 35524171 - 35524121
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  35524171 cgtggtccaccggtgagggacttaattgaactctcatcctagaatccacct 35524121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 39937906 - 39937954
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| ||||||||| ||| |||||||||| |||||||||||||    
T  39937906 gtggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 24565620 - 24565573
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  24565620 tggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 24606656 - 24606609
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||| ||||||||  |||||||||||||| |||||||||||||    
T  24606656 tggtccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 16195129 - 16195178
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||| ||||||||| |||| ||||||| |||||| ||||||||||||||    
T  16195129 gtggtacaccagtgatggacttaattgatccctcaccctagaatccacct 16195178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 23253485 - 23253534
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||| |||| ||||||||| |||||| ||||||| |||||||||||||    
T  23253485 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 27345930 - 27345967
Alignment:
Q  194 gtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  27345930 gtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 40372163 - 40372208
Alignment:
Q  186 gtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||| |||||| || |||||||||||||| |||||||||||||    
T  40372163 gtccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 234
Target Start/End: Complemental strand, 38406449 - 38406397
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacctat 234  Q
    ||||||||| ||||||||| | |||||| || ||||||||| |||||||||||    
T  38406449 cgtggtccatcagtgaggggcttaattggactctcatcctaaaatccacctat 38406397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 92 - 165
Target Start/End: Complemental strand, 45140593 - 45140520
Alignment:
Q  92 aggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcat 165  Q
    |||||| ||||||||||||||||  ||| ||||||||| ||||||||| ||||||||||| | |||||||||||    
T  45140593 aggataggattaaatgtgagtagttgtacatgttcccacttttaatttgaataaatctgaaccatctatttcat 45140520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 34941546 - 34941499
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaatccacctat 234  Q
    ||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  34941546 tccactagtgagggacttaattgaaccctcaccctagaatccacctat 34941499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 233
Target Start/End: Original strand, 26354232 - 26354282
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    |||||||||| ||||||||| |||||||||||||| ||||||| |||||||    
T  26354232 gtggtccacctgtgagggacttaattgaaccctcaccctagaacccaccta 26354282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 21280080 - 21280035
Alignment:
Q  186 gtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| |||||| |||||| |||||||||||||||||||||    
T  21280080 gtccaccagtaagggacctaattggaccctcatcctagaatccacc 21280035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 24666853 - 24666901
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||||||||| ||||||| |||||||||||||| |||| |||||||||    
T  24666853 tggtccaccagggagggacttaattgaaccctcaccctataatccacct 24666901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 52129465 - 52129421
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 25055156 - 25055109
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| ||||| || |||||||||||||| |||||||||||||    
T  25055156 tggtccaccaatgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 24666176 - 24666110
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacctatcttataatcattttaa 250  Q
    |||| |||| ||||||||| ||||||| |||||| |||||||||||||  | |||||| ||||||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccattattataaacattttaa 24666110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 13924842 - 13924793
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||| ||||||||  ||||||| |||||| |||||||||||||    
T  13924842 cgtggtccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 14527576 - 14527625
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||| |||| ||||||||| ||||||| |||||| ||||||||||||||    
T  14527576 gtggttcaccggtgagggacttaattgatccctcaccctagaatccacct 14527625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 18363652 - 18363697
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatc 227  Q
    ||||||||||| |||||| || |||||||||||||| |||||||||    
T  18363652 cgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 234
Target Start/End: Original strand, 21281070 - 21281212
Alignment:
Q  92 aggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcatcgagtggcgnnnnnnncgtggtccac 191  Q
    ||||||||||| |||||| |||   |||||||||| || ||||||||| ||||||| | | | |||||||| ||| |  || |       ||||||||||    
T  21281070 aggataagattgaatgtgtgtaattgtatatgttctcacttttaatttgaataaattttaaccatctattttatctaacggtgtttttctcgtggtccac 21281169  T
Q  192 cagtgagggacataattgaaccctcatcctagaatccacctat 234  Q
    |  |||||||  |||||| ||||||| ||||||||||||||||    
T  21281170 cgatgagggatctaattggaccctcaccctagaatccacctat 21281212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 36599276 - 36599231
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatc 227  Q
    ||||||||||| |||||| || |||||||||||||| |||||||||    
T  36599276 cgtggtccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 6056999 - 6057047
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||| ||||||||| || | ||||||||| |||||||||||||    
T  6056999 gtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 53777870 - 53777822
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccac 230  Q
    ||||||||||| ||||| ||| |||||| |||||||||||| |||||||    
T  53777870 cgtggtccaccggtgagagacttaattggaccctcatcctaaaatccac 53777822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 26240872 - 26240921
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||||||    
T  26240872 tggtccaccggtgagggacttaattgaaccctcaccctagaatccaccta 26240921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 5491335 - 5491386
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||||| ||||    
T  5491335 cgtggtccaccggtgagggacctaattggaccctcatcctagaatcccccta 5491386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 231
Target Start/End: Original strand, 13416244 - 13416383
Alignment:
Q  92 aggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctatttcatcgagtggcgnnnnnnncgtggtccac 191  Q
    |||||| |||| ||||||||||   |||||||||| || ||||||||| |||| |||| | | |||||||| ||| |  || |       ||||||||||    
T  13416244 aggataggattgaatgtgagtaattgtatatgttctcacttttaatttgaatatatcttaaccatctattttatctaacggtgtttttctcgtggtccac 13416343  T
Q  192 cagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    | | ||||||| |||||| |||||||||||||||||||||    
T  13416344 cggcgagggacctaattggaccctcatcctagaatccacc 13416383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  189 caccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||| ||||||||| |||||||||||||| |||||||||||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  189 caccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||| ||||||||| |||||||||||||| |||||||||||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 26240161 - 26240112
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    |||| |||| ||||||||| ||||||| |||||| |||||||||||||||    
T  26240161 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccta 26240112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 31109284 - 31109239
Alignment:
Q  186 gtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  31109284 gtccaccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 31116687 - 31116732
Alignment:
Q  186 gtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||| ||||||||| |||||| ||||||| |||||||||||||    
T  31116687 gtccaccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Original strand, 4060049 - 4060097
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccac 230  Q
    ||||||||||| |||| |||  ||||||| |||||||||||||||||||    
T  4060049 cgtggtccaccggtgacggatttaattgagccctcatcctagaatccac 4060097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 24848427 - 24848475
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||| |||| ||||||||| |||| ||||||||| ||||||||||||||    
T  24848427 tggtacaccggtgagggacttaatagaaccctcaccctagaatccacct 24848475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 27745593 - 27745553
Alignment:
Q  194 gtgagggacataattgaaccctcatcctagaatccacctat 234  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  27745593 gtgagggacttaattgaaccctcaccttagaatccacctat 27745553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 31109371 - 31109319
Alignment:
Q  99 gattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctga 151  Q
    |||| |||||||| |||  || ||||||||| |||||||||||||||||||||    
T  31109371 gattgaatgtgagcagctctacatgttcccacttttaatttaaataaatctga 31109319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Original strand, 22632969 - 22633018
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    ||||||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  22632969 tggtccaccggtgagggacttaattgatccctcaccctagaatccaccta 22633018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 231
Target Start/End: Original strand, 33322214 - 33322251
Alignment:
Q  194 gtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||| |||||||||||||||||||||||||||||    
T  33322214 gtgagggatataattgaaccctcatcctagaatccacc 33322251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 42663998 - 42664046
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||||||||||||||||| |||||||||||||| |||| ||| |||||    
T  42663998 tggtccaccagtgagggacttaattgaaccctcaccctaaaattcacct 42664046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 202619 - 202576
Alignment:
Q  189 caccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaattcacct 202576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 317456 - 317413
Alignment:
Q  189 caccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||| ||||||||| ||||||||||||||||||||||| |||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaattcacct 317413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 22632369 - 22632323
Alignment:
Q  184 tggtccaccagtgagggacataattgaaccctcatcctagaatccac 230  Q
    ||||||||| ||||||||| ||||||| |||||| ||||||||||||    
T  22632369 tggtccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 26847146 - 26847096
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    |||||| |||| ||||||||| |||||| ||||||| ||||||||||||||    
T  26847146 cgtggttcaccggtgagggacttaattggaccctcaccctagaatccacct 26847096  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Complemental strand, 5434081 - 5434032
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||| |||| |||| |||||| ||||||| |||||||||||||    
T  5434081 cgtggtccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 26132132 - 26132181
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||||||||||||| |||||| ||||||| | || ||||||||    
T  26132132 cgtggtccaccagtgagggacctaattggaccctcaccttaaaatccacc 26132181  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 36403024 - 36403073
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||| ||||||||| |||||| |||||||  ||||||||||||    
T  36403024 cgtggtccaccggtgagggacctaattggaccctcactctagaatccacc 36403073  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 4402287 - 4402335
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||| |||| ||||||||| |||| ||||||||| |||||||||||||    
T  4402287 gtggttcaccggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 19220961 - 19220913
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||| ||| |||| |||| ||||||||||||||||||||||| ||||    
T  19220961 gtggtctaccggtgacggacttaattgaaccctcatcctagaattcacc 19220913  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 26847721 - 26847769
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||| |||| |||||| || ||||||| ||||||||||||||||||||    
T  26847721 gtggttcaccggtgaggaacttaattgatccctcatcctagaatccacc 26847769  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 18537497 - 18537541
Alignment:
Q  187 tccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||| ||||||||| |||||||||||||||| |||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 44296908 - 44296860
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    |||||||||||||||||||| |||||| ||||||| |||||||| ||||    
T  44296908 gtggtccaccagtgagggacttaattggaccctcaccctagaattcacc 44296860  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 20606921 - 20606972
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccacctat 234  Q
    ||||| |||| ||||||||| |||||||||||||| |||||||| |||||||    
T  20606921 gtggttcaccggtgagggacttaattgaaccctcaccctagaattcacctat 20606972  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 127741 - 127785
Alignment:
Q  189 caccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    |||| |||| |||| |||||||||||||| |||||||||||||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccaccta 127785  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 6873556 - 6873516
Alignment:
Q  197 agggacataattgaaccctcatcctagaatccacctatctt 237  Q
    |||||| |||||||||||||| |||| ||||||||||||||    
T  6873556 agggacttaattgaaccctcaccctaaaatccacctatctt 6873516  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 233
Target Start/End: Complemental strand, 6512 - 6462
Alignment:
Q  183 gtggtccaccagtgagggacataattgaaccctcatcctagaatccaccta 233  Q
    |||||||| | ||||||||| |||||||||||||| ||||||| |||||||    
T  6512 gtggtccatcggtgagggacttaattgaaccctcaccctagaacccaccta 6462  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 2138526 - 2138476
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacct 232  Q
    ||||||||||| ||||||||| |||||| ||||||| |||||||| |||||    
T  2138526 cgtggtccaccggtgagggacctaattggaccctcaccctagaattcacct 2138476  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 162
Target Start/End: Complemental strand, 10965369 - 10965299
Alignment:
Q  92 aggataagattaaatgtgagtagccgtatatgttcccatttttaatttaaataaatctgatctatctattt 162  Q
    |||||| |||| |||||||||||  ||| ||||| ||| ||||||||||||||||| ||| | ||||||||    
T  10965369 aggataggattgaatgtgagtagttgtacatgtttccacttttaatttaaataaatttgaaccatctattt 10965299  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 231
Target Start/End: Original strand, 10966379 - 10966428
Alignment:
Q  182 cgtggtccaccagtgagggacataattgaaccctcatcctagaatccacc 231  Q
    ||||||||||| ||||||||| |||||| ||| ||| |||||||||||||    
T  10966379 cgtggtccaccggtgagggacctaattggaccttcaccctagaatccacc 10966428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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