View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1194_low_17 (Length: 317)

Name: NF1194_low_17
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1194_low_17
NF1194_low_17
[»] chr2 (1 HSPs)
chr2 (30-317)||(34348559-34348846)


Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 317
Target Start/End: Original strand, 34348559 - 34348846
Alignment:
Q  30 gtatggtgtgctcaaaacctgttgataaaaatatattcataaaatgaattttatgnnnnnnngtgctaaatatgtttttaatctcatagaatgccatcat 129  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||| |||||||||||    
T  34348559 gtatggtgtgctcaaaacctgttgataaaaatatattcattaaatgaattttatgtttttttgtgctaaatatgtttttaatctcataaaatgccatcat 34348658  T
Q  130 atcaagtttagccatattgctatgctaaaattagtgatttcataaattaagcatgcagataataaattttgctaaaatcactaaattagggtttaaaccc 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34348659 atcaagtttagccatattgctatgctaaaattagtgatttcataaattaagcatgctgataataaattttgctaaaatcactaaattagggtttaaaccc 34348758  T
Q  230 tgatnnnnnnnnttgtataaacaaaatttgattgatggcattttataaagactactagcaacataatttaacccttaattttgttagc 317  Q
    ||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34348759 tgataaaaaaaattgtataaacaaaatttgattgatggcattttataaagactactagcaacataatttaacccttaatttttttagc 34348846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University