View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1194_low_24 (Length: 253)
Name: NF1194_low_24
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 4599856 - 4600076
Alignment:
| Q |
29 |
aacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcctattacaccgt |
128 |
Q |
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| T |
4599856 |
aacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcctattacaccgt |
4599955 |
T |
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| Q |
129 |
tttgagaatcctgctcccattaattgaagataagtaaatttttgaacaatcataacnnnnnnngttatctattactaatttttagtgttgcacctgatat |
228 |
Q |
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| T |
4599956 |
tttgagaatcctgctcccattaattgaagataagtaaatttttgaacaatcataacaaaaaaagttatctattactaatttttagtgttgcacctgatat |
4600055 |
T |
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| Q |
229 |
ttggttttatattattcgaca |
249 |
Q |
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||||||||||| |||||||| |
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| T |
4600056 |
ttggttttatacaattcgaca |
4600076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 4624190 - 4624295
Alignment:
| Q |
29 |
aacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcctattacaccgt |
128 |
Q |
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|||||||||||||||||| ||| | ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
4624190 |
aacatgaaatcaagggcgtcttcagcggctttttgatctaatgggtcagttgagtatggtttaaaccagtgagagtttaatccaatgcctattacaccat |
4624289 |
T |
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| Q |
129 |
tttgag |
134 |
Q |
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|||||| |
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| T |
4624290 |
tttgag |
4624295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 25017305 - 25017429
Alignment:
| Q |
29 |
aacatgaaatcaagggcgcgttcggtggcttgttgatctaatgggtctgttgagtacggtttaaaccagtgagagtttaatccaatgcctattacaccgt |
128 |
Q |
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|||||| ||||||| || ||||||| ||||| |||||||||| || ||||| |||| ||||||||||||| |||| | ||||||||| ||| | |
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| T |
25017305 |
aacatgtaatcaagagcacgttcggcagcttgatgatctaatgtgtgatttgagaacggcagaaaccagtgagagcttaagctgatgcctattgaaccat |
25017404 |
T |
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| Q |
129 |
tttgagaatcctgctcccattaatt |
153 |
Q |
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|||||||| ||||| ||||||||| |
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| T |
25017405 |
tttgagaagactgctgccattaatt |
25017429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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