View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1194_low_27 (Length: 251)
Name: NF1194_low_27
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 27510024 - 27510148
Alignment:
| Q |
16 |
atcgcaaaatcctttattttagaatttaattcgagattttaacatcagaattataaaaaagctaaattcattaattttcaagcagtcattaatgtttaac |
115 |
Q |
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| T |
27510024 |
atcgcaaaatcctttattttagaatttaattcgatattttaacatcagaattataaaaaagctaaattcattaattttcaagcagtcattaatgtttaac |
27510123 |
T |
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| Q |
116 |
acagcaacactagtctatcaccatc |
140 |
Q |
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| T |
27510124 |
acagcaacactagtctatcaccatc |
27510148 |
T |
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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 27510969 - 27511005
Alignment:
| Q |
104 |
ttaatgtttaacacagcaacactagtctatcaccatc |
140 |
Q |
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| T |
27510969 |
ttaatatttaacacagcaacaccagtctatcaccatc |
27511005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 33702207 - 33702275
Alignment:
| Q |
70 |
aaaaaagctaaattcattaattttcaagcagtcattaatgtttaacacagcaacactagtctatcacca |
138 |
Q |
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| T |
33702207 |
aaaaaaacttaattcattagttttcagttagtcattaatgtttaacacagcaacactagtctatcacca |
33702275 |
T |
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