View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1194_low_5 (Length: 496)
Name: NF1194_low_5
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1194_low_5 |
 | |
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| [»] chr1 (11 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 31 - 496
Target Start/End: Complemental strand, 25862214 - 25861738
Alignment:
| Q |
31 |
cccctccttggcaagttctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcnnnnnnn-gaacaaggcatgact |
129 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25862214 |
cccctcattggcaaattctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgataaaaaaaaagaacaaggcatgact |
25862115 |
T |
|
| Q |
130 |
caaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatg----------cttctcggcaatgttggttg |
219 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
25862114 |
caaacttaccttcaggtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcaatgttggttg |
25862015 |
T |
|
| Q |
220 |
tattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25862014 |
tattactttcctcttctttcttcttagagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
25861915 |
T |
|
| Q |
320 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25861914 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
25861815 |
T |
|
| Q |
420 |
tccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25861814 |
tccatctatgctatctttttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
25861738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 30 - 496
Target Start/End: Complemental strand, 25887951 - 25887476
Alignment:
| Q |
30 |
gcccctccttggcaagttctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcnnnnnnngaacaaggcatgact |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25887951 |
gcccctccttggcaagttctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcaaaaaa-gaacaaggcatgact |
25887853 |
T |
|
| Q |
130 |
caaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagta----------tgcttctcggcaatgttggttg |
219 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25887852 |
caaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaaagtacgtcaaagtatgcttctcggcaatgttggttg |
25887753 |
T |
|
| Q |
220 |
tattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
25887752 |
tattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaatggtgaggatattttaatatgtttttgatcaaa |
25887653 |
T |
|
| Q |
320 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25887652 |
aaggaataagacaagactcaaacttactttccacttcttgctgatatgcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
25887553 |
T |
|
| Q |
420 |
tccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25887552 |
tccatctatgctatctttttttagcatcttagcaactcctgtttattgttttgattagatactaaagcaaaggatga |
25887476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 31 - 496
Target Start/End: Original strand, 25481821 - 25482297
Alignment:
| Q |
31 |
cccctccttggcaagttctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcnnnnnnn-gaacaaggcatgact |
129 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25481821 |
cccctcattggcaaattctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgataaaaaaaaagaacaaggcatgact |
25481920 |
T |
|
| Q |
130 |
caaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtca----------aagtatgcttctcggcaatgttggttg |
219 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25481921 |
caaacttaccttcaggtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcaatgttggttg |
25482020 |
T |
|
| Q |
220 |
tattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25482021 |
tattactttcctcttctttcttcttagagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
25482120 |
T |
|
| Q |
320 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25482121 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
25482220 |
T |
|
| Q |
420 |
tccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
25482221 |
tccatctaagctatcttattttagcatcttagcaactcctgattattgttttgattagatacaaaagcaaaggatga |
25482297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 31 - 496
Target Start/End: Complemental strand, 25605781 - 25605314
Alignment:
| Q |
31 |
cccctccttggcaagttctgtttattgttttgatcaaataacaaacaaaggtgaggatattttaatatgttttgatcnnnnnnngaacaagg-catgact |
129 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| |
|
|
| T |
25605781 |
cccctcattggcaagttctgtttattgttttgatcaaataacaaacaaaggt--------tttaatatgttttgatcaaaaaa-gaacaagggcatgact |
25605691 |
T |
|
| Q |
130 |
caaacttaccttcatgtagctgcttcacatgatgatgcaggttgtgaaacaggtttgtcgtcaaagtatg----------cttctcggcaatgttggttg |
219 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
25605690 |
caaacttaccttcatgtagctgtatcacttgaagatgcaggttgtgaaacaggtttgtcgtcaaagtatgtcaaagtatgcttctcggcgatgttggttg |
25605591 |
T |
|
| Q |
220 |
tattactttcctcttctttcttcttcgagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
319 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605590 |
tattactttcctcttctttcttcttagagccttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatgtttttgatcaaa |
25605491 |
T |
|
| Q |
320 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605490 |
aaggaataagacaagactcaaacttactttccacttcctgctgataagcaagaacgggaggcttctcagcaagaatagggtcagtcgtcaaaaaaggctc |
25605391 |
T |
|
| Q |
420 |
tccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25605390 |
tccatctatgctttctttttttagcatcttagcaactcctgtttattgttttgattagatactaaagcaaaggatga |
25605314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 414 - 496
Target Start/End: Original strand, 25482440 - 25482522
Alignment:
| Q |
414 |
aggctctccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25482440 |
aggctctccctctatgctctctatttttagcatctcagcaagttctgtttattgttttgattagatgagaaagcaaaggatga |
25482522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 25605171 - 25605089
Alignment:
| Q |
414 |
aggctctccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25605171 |
aggctctccctctatgctctctatttttagcatctcagcaagttctgtttattgttttgattagatgagaaagcaaaggatga |
25605089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 25861595 - 25861513
Alignment:
| Q |
414 |
aggctctccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25861595 |
aggctctccctctatgctctctatttttagcatctcagcaagttctgtttattgttttgattagatgagaaagcaaaggatga |
25861513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 414 - 496
Target Start/End: Complemental strand, 25887333 - 25887251
Alignment:
| Q |
414 |
aggctctccatctatgctatctatttttagcatcttagcaactcctgtttattgttttgattagatacgaaagcaaaggatga |
496 |
Q |
| |
|
||||||||| || ||||| ||||||||||||| || ||||| | |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25887333 |
aggctctccttccatgctctctatttttagcacctcagcaagttctgtttattgttttgattagatgagaaagcaaaggatga |
25887251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 307
Target Start/End: Complemental strand, 50668359 - 50668303
Alignment:
| Q |
250 |
cttttgttcattgttttgataaaaataagaacccaaacggtgaggatattttaatatg |
307 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| ||||||||| ||| |||||| |
|
|
| T |
50668359 |
cttttgttcattgttttgat-caaataagaaaccaaagggtgaggatgtttcaatatg |
50668303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 20950033 - 20949986
Alignment:
| Q |
54 |
attgttttgatcaaataacaaac--aaaggtgaggatattttaatatg |
99 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
20950033 |
attgttttgatcaaataaacaaccaaaaggtgaggatattttaatatg |
20949986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 20951004 - 20950957
Alignment:
| Q |
54 |
attgttttgatcaaataacaaac--aaaggtgaggatattttaatatg |
99 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
20951004 |
attgttttgatcaaataaacaaccaaaaggtgaggatattttaatatg |
20950957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 424 - 474
Target Start/End: Complemental strand, 41074814 - 41074764
Alignment:
| Q |
424 |
tctatgctatctatttttagcatcttagcaactcctgtttattgttttgat |
474 |
Q |
| |
|
||||||||||||| |||| || ||||||||||| |||||| |||||||||| |
|
|
| T |
41074814 |
tctatgctatctactttttgcttcttagcaacttctgtttgttgttttgat |
41074764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 46015675 - 46015608
Alignment:
| Q |
34 |
ctccttggcaagttctgtttattgttttgatcaaataacaaa--caaaggtgaggatattttaatatg |
99 |
Q |
| |
|
|||||| |||| ||||||||| |||||||||||||||| ||| || ||||||| |||||||||||| |
|
|
| T |
46015675 |
ctccttagcaaattctgtttaatgttttgatcaaataaaaaatgaaagggtgaggttattttaatatg |
46015608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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