View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1194_low_8 (Length: 390)

Name: NF1194_low_8
Description: NF1194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1194_low_8
NF1194_low_8
[»] chr4 (2 HSPs)
chr4 (13-358)||(5227759-5228107)
chr4 (141-231)||(45394595-45394685)
[»] chr2 (3 HSPs)
chr2 (89-317)||(38138501-38138731)
chr2 (148-231)||(40583854-40583937)
chr2 (45-86)||(38137474-38137515)
[»] chr7 (2 HSPs)
chr7 (45-132)||(36611455-36611542)
chr7 (141-199)||(30580739-30580797)
[»] chr5 (3 HSPs)
chr5 (141-231)||(40372020-40372110)
chr5 (45-132)||(24565573-24565660)
chr5 (45-132)||(24606609-24606696)
[»] chr1 (2 HSPs)
chr1 (43-133)||(26240831-26240921)
chr1 (43-87)||(27745554-27745598)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 5227759 - 5228107
Alignment:
Q  13 aatatattctagtttttatggactacaaagtaggtggattctatggtgaaggttcaattaagtctcttaccgataaatcataaacaaaataccgtttgat 112  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||    
T  5227759 aatatattctagtttttatggactacaaagtatgtggattctatggtgaaggttcaattaagtctctcatcgatggatcataaacaaaataccgtttgat 5227858  T
Q  113 ttaattaatggctcagatttactaaaacaaaaatgagaacaactttaagtttctacacacaatcatgtccctttccgtttctcttccccatcagattcct 212  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  5227859 ttaattaatggctcggatttactaaaacaaaaatgagaacaattttagatttctacacacaatcatgtccctttccgtttctcgtccccatcacattcct 5227958  T
Q  213 ctctaataaaaaattctgcnnnnnnntggctgccaccataaattcttttgcccaagacacactaaaacaaacataatgcattaagccttaattgatgatg 312  Q
    ||||||  |||||||||||       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5227959 ctctaaccaaaaattctgcaaaaaaatggctgccaccataaattcttttgaccaagacacactaaaacaaacataatgcattaagccttaattgatgatg 5228058  T
Q  313 g---tgtgcaacgtgaatctgaacttgcacctctttttcttttattaat 358  Q
    |   |||| ||||||||||||||||||||||||||||||||||||||||    
T  5228059 gtcatgtgaaacgtgaatctgaacttgcacctctttttcttttattaat 5228107  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 45394685 - 45394595
Alignment:
Q  141 aaaaatgagaacaactttaagtttctacacacaatcatgtccctttccgtttctcttccccatcagattcctctctaataaaaaattctgc 231  Q
    |||||||||||||| ||||  || ||||||||||||| || ||||||| ||||||||||||||| | ||||| |||||  |||| ||||||    
T  45394685 aaaaatgagaacaagtttaccttgctacacacaatcacgttcctttccttttctcttccccatccggttcctttctaaccaaaacttctgc 45394595  T

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Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 89 - 317
Target Start/End: Complemental strand, 38138731 - 38138501
Alignment:
Q  89 atcataaacaaaataccgtttgatttaattaatggctcagatttact-aaaacaaaaatgagaacaactttaagtttctacacacaatcatgtccctttc 187  Q
    ||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||| | ||||||||||  ||||||||||||||||||||||||||    
T  38138731 atcatgaataaaataccatttgatttaattaatggttcagatttacttaaaacaaaaataaaaacaactttagatttctacacacaatcatgtccctttc 38138632  T
Q  188 cgtttctcttccccatcagattcctctctaataaaaaattctg-cnnnnnnntggctgccaccataaattcttttgcccaagacacactaaaacaaacat 286  Q
    |||||||| |||||||| |||||||||||||  ||||||||||         | |||||||||||||||||||||| |||||||||||||||||||||||    
T  38138631 cgtttctcctccccatcggattcctctctaaccaaaaattctgaaaaaaaaatagctgccaccataaattcttttgaccaagacacactaaaacaaacat 38138532  T
Q  287 aatgcattaagccttaattgatgatggtgtg 317  Q
    ||||| |||||||||||||||||||| ||||    
T  38138531 aatgctttaagccttaattgatgatgttgtg 38138501  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 40583854 - 40583937
Alignment:
Q  148 agaacaactttaagtttctacacacaatcatgtccctttccgtttctcttccccatcagattcctctctaataaaaaattctgc 231  Q
    |||||||||||| ||| ||||| ||||||| ||| |||||| ||||||||||||||  ||||||| |||||  |||||||||||    
T  40583854 agaacaactttacgttgctacatacaatcacgtcgctttccttttctcttccccatatgattcctttctaaccaaaaattctgc 40583937  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 38137474 - 38137515
Alignment:
Q  45 ggtggattctatggtgaaggttcaattaagtctcttaccgat 86  Q
    |||| |||||| ||||| ||||||||||||||||||||||||    
T  38137474 ggtgaattctagggtgatggttcaattaagtctcttaccgat 38137515  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 132
Target Start/End: Complemental strand, 36611542 - 36611455
Alignment:
Q  45 ggtggattctatggtgaaggttcaattaagtctcttaccgataaatcataaacaaaataccgtttgatttaattaatggctcagattt 132  Q
    ||||||||||| ||||| ||||||||||| ||||| |||| |  | ||| ||||||||||| || |||||||||||||| | ||||||    
T  36611542 ggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagattt 36611455  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 30580739 - 30580797
Alignment:
Q  141 aaaaatgagaacaactttaagtttctacacacaatcatgtccctttccgtttctcttcc 199  Q
    |||||||||||||||||||  || ||||||||||| | |||| ||||| ||||||||||    
T  30580739 aaaaatgagaacaactttatattgctacacacaattacgtccttttccttttctcttcc 30580797  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 40372110 - 40372020
Alignment:
Q  141 aaaaatgagaacaactttaagtttctacacacaatcatgtccctttccgtttctcttccccatcagattcctctctaataaaaaattctgc 231  Q
    |||||||||||||| ||||  || ||||||| ||||| || ||||||| ||||||||||||||| | ||||| |||||  |||| ||||||    
T  40372110 aaaaatgagaacaagtttaccttgctacacaaaatcacgttcctttccttttctcttccccatctggttcctttctaaccaaaacttctgc 40372020  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 24565573 - 24565660
Alignment:
Q  45 ggtggattctatggtgaaggttcaattaagtctcttaccgataaatcataaacaaaataccgtttgatttaattaatggctcagattt 132  Q
    ||||||||||| ||||| ||||||||||| || || |||| |  | ||| ||||||||||| || |||||||||||||| | ||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagattt 24565660  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 24606609 - 24606696
Alignment:
Q  45 ggtggattctatggtgaaggttcaattaagtctcttaccgataaatcataaacaaaataccgtttgatttaattaatggctcagattt 132  Q
    ||||||||||| ||||| ||||||||||| || || |||| |  | ||| ||||||||||| || |||||||||||||| | ||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtttagattt 24606696  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 26240921 - 26240831
Alignment:
Q  43 taggtggattctatggtgaaggttcaattaagtctcttaccgataaatcataaacaaaataccgtttgatttaattaatggctcagattta 133  Q
    ||||||||||||| ||||| |||||||||||||| || |||| |  | ||| || |||||||||||||||| ||| ||||| | |||||||    
T  26240921 taggtggattctagggtgagggttcaattaagtccctcaccggtggaccatgaagaaaataccgtttgattgaatcaatggttgagattta 26240831  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 87
Target Start/End: Original strand, 27745554 - 27745598
Alignment:
Q  43 taggtggattctatggtgaaggttcaattaagtctcttaccgata 87  Q
    ||||||||||||| ||||| |||||||||||||| || |||||||    
T  27745554 taggtggattctaaggtgagggttcaattaagtccctcaccgata 27745598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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