View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_high_18 (Length: 277)
Name: NF11950_high_18
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 5173755 - 5173509
Alignment:
| Q |
1 |
tgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatcc |
100 |
Q |
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| T |
5173755 |
tgacatgttgttacttgtcattatcctatagctaaaaatgctgctttcaaatttaagtttataaatgatctacaattgaagttcaaaaggttcgtcatcc |
5173656 |
T |
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| Q |
101 |
aaa-tttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggtagcacaagcaactgat |
199 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173655 |
aaaatttagtgacacaattgagacatcaaatctatttttatcattagaaatctaactcaataacccggaatttgcaaacatggtagcacaagcaactgat |
5173556 |
T |
|
| Q |
200 |
aatggaatccgtagccgaaagaaatcatcaagaggtcaccacaggtt |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173555 |
aatggaatccgtagccgaaagaaatcatcaagaggtcaccacaggtt |
5173509 |
T |
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