View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_high_9 (Length: 375)
Name: NF11950_high_9
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 45596738 - 45596377
Alignment:
| Q |
1 |
ccattaatccgataaaatggtactactagatatgaacttctatctacttactattggaaggcagcatagaatggatgatcgaattgttttttatctttcc |
100 |
Q |
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| T |
45596738 |
ccattaatccgataaaatagtactactagatatgaacttctatctact----attggaagacagcatagaatggatgatcgaattgttttttatctttcc |
45596643 |
T |
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| Q |
101 |
atctacaggagagattaatgtcacaca--------ccctcctgtcaaaaaataaagagaaattatgaaaatgaattgtagaagcccacgttgagaaatat |
192 |
Q |
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| T |
45596642 |
atctacacaagagattaatgtcacacatttccccaccctcctgtcaaaaaataaagagaaattatgaaaatgaattgtagaagcccacgttgagaaatat |
45596543 |
T |
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| Q |
193 |
tttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacaccttaaccaataaacattcattgccgatagtattgact |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45596542 |
tttgacacgttacacagttcgttcaagttcagctgataaatgaaactcgtcaacactatacaccttaaccaataaacattcattgccgatagtattgtct |
45596443 |
T |
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| Q |
293 |
tgtcttt------------tctctccaatccaccgcttcaaaaagttttcccacaacttcgcctga |
346 |
Q |
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||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
45596442 |
tgtcttttctcatcacttctctctccaatctaccgcttcaaaaagttttcacacaacttcacctga |
45596377 |
T |
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