View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_low_1 (Length: 733)
Name: NF11950_low_1
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 29684529 - 29684216
Alignment:
| Q |
19 |
caattgcactatggttttcaagccttacgaatactacttgtttgtgnnnnnnncttcttataagtgaaaggagctttaataagtttaagcattttgttta |
118 |
Q |
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| T |
29684529 |
caattgcaccatggttttcaagccttacgaatactacttgtttgtgtttttttcttcttataagtgaaaggagctttaataagtttaagcattttgttta |
29684430 |
T |
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| Q |
119 |
gaaattttggaatagatattaaaagctaaactaacctgcaacaacacactcccaatataggtttaattcaataaatctataacagtatataaataaattt |
218 |
Q |
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| T |
29684429 |
gaaattttagaatagatattaaaagctaagctaacctgcaacaacacactcccaatataggtttaattcaataaatctataacagtatataaataaattt |
29684330 |
T |
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| Q |
219 |
acttacaagaatgttatataaaagtatcccattgatttctatgtgtgcagaccataattgtacaccgaaattgaattgaaaggtttgattttgtgaagtt |
318 |
Q |
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| T |
29684329 |
acttacaagaatgccatataaaagtatcccattgatttctatgtgtgcagaccagagttaaacaccgaaattgaattgaaaggtttgattttgtgaagtt |
29684230 |
T |
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| Q |
319 |
ttggtgtataaaat |
332 |
Q |
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| T |
29684229 |
ttggtgtataaaat |
29684216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 627 - 712
Target Start/End: Complemental strand, 29681324 - 29681239
Alignment:
| Q |
627 |
taaatcagtaaatcaaaatatttcaacctaccgacttgctttgctctataaatcaaagcaattactagtatactctcactgctcat |
712 |
Q |
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| T |
29681324 |
taaatcagtagatcaaaatatttcaaccgaccgacttgttttgttctataaatcaaagcaattactagtatactctcattgctcat |
29681239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 501 - 561
Target Start/End: Complemental strand, 29681382 - 29681322
Alignment:
| Q |
501 |
ctaagagaaaaacgccaaaccaaacatcttaaagcaaaattgcataaaagtgtcacattaa |
561 |
Q |
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| T |
29681382 |
ctaagagaaaaacgccaaaccaaacatcttaaagcaaaattgcataaaagtgtcacattaa |
29681322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 339 - 394
Target Start/End: Complemental strand, 29682002 - 29681947
Alignment:
| Q |
339 |
agaaaaggtagttttgtgaagttttgatttctatttgagattttcatgtgtgctag |
394 |
Q |
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| T |
29682002 |
agaaaaggtagttttgtgaagttttgatttctatttgagattttcatgtgcgctag |
29681947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 423 - 474
Target Start/End: Complemental strand, 29681749 - 29681698
Alignment:
| Q |
423 |
attggatattggaatatttttcctaaagctggatatattttcagacaagtca |
474 |
Q |
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| T |
29681749 |
attggatattggaatatttttcctaaagctggatttattttcacaaaagtca |
29681698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 42650039 - 42650084
Alignment:
| Q |
72 |
cttcttataagtgaaaggagctttaataagtttaagcattttgttt |
117 |
Q |
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| T |
42650039 |
cttcttataagtagaaggagctttaagaagtttaagcattttgttt |
42650084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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