View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_low_11 (Length: 365)
Name: NF11950_low_11
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 45597393 - 45597063
Alignment:
| Q |
1 |
gatcatccaaatctcacccttcaagatgtaattgctactgatggtggtacgattagaagcttccatctccgcaccacctctcccatgtccttcaatgttg |
100 |
Q |
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| T |
45597393 |
gatcatccaaatctcacccttcaagatgtaattgctactgatggtggtacgattagaagcttccatctccgcaccacctctcccatgtccttcgatgttg |
45597294 |
T |
|
| Q |
101 |
tgtcgagagcttctccttgatttgcattatattctcacgatgcgaggttcatagcccacgatgcaagttaggcactagctaactctttgatttcttcact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
45597293 |
tgtcgagagcttctccttgatttgcattatattctcacgatgcgaggttcatagcccgcgatgcaagttaggcactagctgcctctttgatttcttcact |
45597194 |
T |
|
| Q |
201 |
ccatattccatattttctcaccaaaacgtctttaacaactatgccctaagcttgataaacgataaacttgtaaaaattatagtactgttacagagttgtc |
300 |
Q |
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| T |
45597193 |
ccatattccatattttctcaccaaaacgtctttaacaactatgccctaagcttaataaacgataaacttgtaaaaattatagtactgttatagagttgtc |
45597094 |
T |
|
| Q |
301 |
aatttcagatgtatttccatagcttcaagga |
331 |
Q |
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| T |
45597093 |
aatttcatatgtatttccatagcttcaagga |
45597063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 276
Target Start/End: Original strand, 26807951 - 26808107
Alignment:
| Q |
120 |
atttgcattatattctcacgatgcgaggttcatagcccacgatgcaagttaggcactagctaactctttgatttcttcactccatattccatattttctc |
219 |
Q |
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|||| ||| |||||||||||||| | || ||||| | | |||||| || ||| || ||||| |||| ||| |||||||| ||| | ||||| | ||||| |
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| T |
26807951 |
atttccatcatattctcacgatgtggggctcatatctcgcgatgcgagatagacagtagctgactccttggtttcttcaatccttgctccatttcttctc |
26808050 |
T |
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| Q |
220 |
accaaaacgtctttaacaactatgccctaagcttgataaacgataaacttgtaaaaa |
276 |
Q |
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|| | ||||||| ||||| ||||||| || |||||| || ||||||||||||||| |
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| T |
26808051 |
actagaacgtctgtaacagctatgccacaatcttgatcaattataaacttgtaaaaa |
26808107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 276
Target Start/End: Complemental strand, 15048576 - 15048411
Alignment:
| Q |
111 |
ttctccttgatttgcattatattctcacgatgcgaggttcatagcccacgatgcaagttaggcactagctaactctttgatttcttcactccatattcca |
210 |
Q |
| |
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||||||| ||||| ||| ||||| ||||||||| | || |||||||||||||||| ||| | |||| |||| |||||||||||||| | | |||| |
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| T |
15048576 |
ttctcctagatttccatcgtattcgcacgatgcgggaatcgtagcccacgatgcaaggtagaaagtagccgactccttgatttcttcacttcttgctcca |
15048477 |
T |
|
| Q |
211 |
tattttctcaccaaaacgtctttaacaactatgccctaagcttgataaacgataaacttgtaaaaa |
276 |
Q |
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| || |||||| | || ||| |||| ||||| ||| || ||| || || |||||||||||||||| |
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| T |
15048476 |
ttttctctcactagaatgtccgtaacgactattccccaaacttaattaatgataaacttgtaaaaa |
15048411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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