View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11950_low_13 (Length: 346)
Name: NF11950_low_13
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 3816842 - 3816510
Alignment:
| Q |
1 |
tattgaaaaatgacaaggtaaaaaatatgtcatttttagattaatatttgtcatgttggttaaaaatgtgcctttcaaagattttaatgttttattttac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3816842 |
tattgaaaaatgacaaggtaaaaaatatgtcatttttagattaatatttgtcatgtcgattaaaaatgtgcctttcaaagattttaatgttttattttac |
3816743 |
T |
|
| Q |
101 |
tttcatgactgcaggttaccaatgctattagaagcataagtttgccaacaatgagggagctaaagttaagccgtcatgtattt-gataagatgaccaacc |
199 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
3816742 |
tttcatgattgcagggtaccaatgctattagaagcataagtttgccaacaatgagggagctgaagttaagccgtcatgtattttgataagatgaccaacc |
3816643 |
T |
|
| Q |
200 |
tgcggttttt-gtattttcttggtatggaaggtttt-gattg--tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacat |
295 |
Q |
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|
|||||||||| ||||||| |||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3816642 |
tgcggttttttgtattttggtggtatagaaggtttttgatttgtttttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacat |
3816543 |
T |
|
| Q |
296 |
actgccctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |
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|
| T |
3816542 |
actgccctctaaaatcattcccagagaagtttt |
3816510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 3809256 - 3808934
Alignment:
| Q |
1 |
tattgaaaaatgacaaggtaaaaaatatgtcatttttagattaatatttgtcatgttggttaaaaatgtgcctttcaaagattttaatgttttattttac |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3809256 |
tattgaaaaatgacaaggtaaaaagtatgtcatttttagat-aacatttgtcatgttg-ttaaaaaggtgcctttcaaagattttaatgttttattttac |
3809159 |
T |
|
| Q |
101 |
tttcatgactgcaggttaccaatgctattagaagcataagtttgccaacaatgagggagctaaagttaagccgtcatgtatttgataagatgaccaacct |
200 |
Q |
| |
|
||||||||| ||| ||| || |||| |||||||||||| ||| |||||||||| |||| ||||||||| || ||||||||||||||||||||| || |
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| T |
3809158 |
tttcatgac---agggtactgattctataagaagcataagtctgcgaacaatgaggaagctcgagttaagccctcgtgtatttgataagatgaccaaact |
3809062 |
T |
|
| Q |
201 |
gcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgc |
300 |
Q |
| |
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|| |||||||||||| || ||| || |||| |||||||||||||| || |||||||||||||| | | ||| |||||||||||||| || || |
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| T |
3809061 |
tcgatttttgtattttggtgatatagatagtttcaattgtcttcctcaaaggtttcaatcttttccaactaatctaagatatcttcattggatgtattgt |
3808962 |
T |
|
| Q |
301 |
cctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
||||||||||||||||||||||| |||| |
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|
| T |
3808961 |
cctctaaaatcattcccagagaactttt |
3808934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 163 - 328
Target Start/End: Original strand, 3956520 - 3956685
Alignment:
| Q |
163 |
aagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttcaatctt |
262 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||| |||||| || || || ||||| ||| || ||||| ||||| ||||||||| |
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|
| T |
3956520 |
aagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttggatcgtattcctgaagggattcaatctt |
3956619 |
T |
|
| Q |
263 |
ttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
||||| || | |||||||||||||||||| || | ||||||||||||| || ||||||| |||| |
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|
| T |
3956620 |
ttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctcagagaagtttt |
3956685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 158 - 328
Target Start/End: Complemental strand, 3800671 - 3800501
Alignment:
| Q |
158 |
agctaaagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttca |
257 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||||||| |||| | |||| |||||| ||||| | | ||| || |||||||||||||||||| |
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|
| T |
3800671 |
agctgaagttaagccctcatgtatttgctaagatgaccaacttgcgatatttggattttcatggtaaatacgatttggaacttcttcctcaagggcttca |
3800572 |
T |
|
| Q |
258 |
atcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||| | | |||||||||||||||||||||||| |||| |
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| T |
3800571 |
atcttttccaaatgatctaagatatcttcattggatgcattaccctctaaaatcattcccagagaagtttt |
3800501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 329
Target Start/End: Original strand, 3920865 - 3920952
Alignment:
| Q |
242 |
ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttt |
329 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||| |||||||||||||| | | | |||||||||||||||| ||||||| ||||| |
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|
| T |
3920865 |
ttcctcaagggcttgaatcttttccaactggtttaagatatcttcattggatagattaccctctaaaatcattctcagagaagttttt |
3920952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 328
Target Start/End: Complemental strand, 4001377 - 4001207
Alignment:
| Q |
158 |
agctaaagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggtatggaaggttttgattgtcttcctcaagggcttca |
257 |
Q |
| |
|
|||| |||||||||| ||||||||||| |||||||||||||||||| | |||| |||| |||||| | | ||| || |||||||||||||||||| |
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| T |
4001377 |
agctgaagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttcattggtaaatacgatttggaacttcttcctcaagggcttca |
4001278 |
T |
|
| Q |
258 |
atcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
|||||| ||| || | ||| |||| || ||||| | | | ||||||||||||||||||| |||| |||| |
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| T |
4001277 |
atctttcccaactgatctaagatatatttgttggatacattaccctctaaaatcattcccaaagaagtttt |
4001207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 328
Target Start/End: Original strand, 3933996 - 3934172
Alignment:
| Q |
158 |
agctaaagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtatttt---cttggtatggaag---gttttgattgtcttcctcaagg |
251 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| | |||||| ||||| ||| | | || | ||| ||| | |||||||||| |
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|
| T |
3933996 |
agctaaagttaagccctcatgtatttgataagatgaccaacctccaatttttgaatttttgggttgattttgatgactatttggatctttttcctcaagg |
3934095 |
T |
|
| Q |
252 |
gcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
|||| ||||||||||| |||| | | ||||||||||||| || | |||||||||||||||||||||||| |||| |
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|
| T |
3934096 |
gcttgaatcttttccaactggtcttagatatcttcattgggtatgttaccctctaaaatcattcccagagaagtttt |
3934172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 3920775 - 3920817
Alignment:
| Q |
158 |
agctaaagttaagccgtcatgtatttgataagatgaccaacct |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
3920775 |
agctaaagttaagccctcatgtatttgataagatgaccaacct |
3920817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 4009093 - 4009029
Alignment:
| Q |
158 |
agctaaagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggt |
222 |
Q |
| |
|
|||| |||||||||| ||||||||||| ||||||||||||||||| |||||| |||||| |||| |
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| T |
4009093 |
agctgaagttaagccctcatgtatttgctaagatgaccaacctgctatttttggattttcatggt |
4009029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 240 - 328
Target Start/End: Complemental strand, 4217620 - 4217532
Alignment:
| Q |
240 |
tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
328 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | ||| |||||||| |||| || | |||||||||||||||||||||||| |||| |
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|
| T |
4217620 |
tcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccctctaaaatcattcccagagaactttt |
4217532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 4217706 - 4217647
Alignment:
| Q |
163 |
aagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattttcttggt |
222 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||| |||||| ||||| ||||| |
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|
| T |
4217706 |
aagttaagccctcatgtatttgctaagatgaccaacctgaaatttttgaatttttttggt |
4217647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 122 - 328
Target Start/End: Complemental strand, 13397087 - 13396875
Alignment:
| Q |
122 |
atgctattagaagcataagt------ttgccaacaatgagggagctaaagttaagccgtcatgtatttgataagatgaccaacctgcggtttttgtattt |
215 |
Q |
| |
|
|||||||||||||||||||| ||| || |||| ||| |||| |||||||||| | ||||||||||||||||||||||||| ||||||||||| |
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| T |
13397087 |
atgctattagaagcataagtgtagacttgtcagcaattaggaagctgaagttaagcccgcctgtatttgataagatgaccaacctgaaatttttgtattt |
13396988 |
T |
|
| Q |
216 |
tcttggtatggaaggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattc |
315 |
Q |
| |
|
|| || ||| || ||||| ||| ||||||||||||||||||||| ||||||| || | ||| ||||||| |||||| | | |||||||||||||||| |
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|
| T |
13396987 |
tcatgatatagacggtttggatcgtcttcctcaagggcttcaattttttccaactgatctaagatatctttattggatgcattaccctctaaaatcattc |
13396888 |
T |
|
| Q |
316 |
ccagagaattttt |
328 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
13396887 |
ccagagaagtttt |
13396875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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