View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_low_14 (Length: 321)
Name: NF11950_low_14
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 44944216 - 44944456
Alignment:
| Q |
69 |
accaaaatccataagagataaaatgactagaaacctatgaataatagcgccattaatcatgatnnnnnnnnnnnnnnnnnnnngaggattgctatta--- |
165 |
Q |
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| T |
44944216 |
accaaaatccataagagataaaatgactagaaacctatgaataatagcgccattaatcatgataaaaaaaataactaaaaaaagaggattgctattaatt |
44944315 |
T |
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| Q |
166 |
-atcacgataaaatatgtccctaaggaattaagaaaatacaaagttgttcaagcaggagatcaagggagggtattgcatggaattaagaaaatatttgca |
264 |
Q |
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| T |
44944316 |
aatcacgataaaatatgtccctaaggaattaagaaaatataaagttgttcaagccggaaatcaagggagggtattgcatggaattaagaaaatatttgca |
44944415 |
T |
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| Q |
265 |
gtgttaaatagccattcgtgaattgtcgctatgttatctct |
305 |
Q |
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| T |
44944416 |
gtgttaaatagccattcgtgaattgtcgctatgttatctct |
44944456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 29818632 - 29818724
Alignment:
| Q |
209 |
ttgttcaagcaggagatcaagggagggtattgcatggaattaagaaaatatttgcagtgttaaatagccattcgtgaattg-tcgctatgttatctct |
305 |
Q |
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| T |
29818632 |
ttgttccagctggaaaacaagggagggcattgtatggcattaataaaata-----agtgttaaatagccattcgtgaattgtttgctatgttatctct |
29818724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 305
Target Start/End: Complemental strand, 47539584 - 47539483
Alignment:
| Q |
205 |
aaagttgttcaagcaggagatcaagggagggtattgcatggaattaagaaaatatttgcagtgttaaatagccattcgtgaattg-tcgctatgttatct |
303 |
Q |
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| T |
47539584 |
aaagttgttcctgccggaaaacaagggaggacattgtattgcattaagaaaatatcttaagtgttaaataaccatccgtgaattgttcgctatgttatct |
47539485 |
T |
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| Q |
304 |
ct |
305 |
Q |
| |
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|| |
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| T |
47539484 |
ct |
47539483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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