View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_low_15 (Length: 303)
Name: NF11950_low_15
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 77 - 298
Target Start/End: Original strand, 33657290 - 33657518
Alignment:
| Q |
77 |
tcatcattatttctcgttctac-------gtgctatggatattattgcaattttattttacaccttcctctttctcttaattaccctcctcttgtatcca |
169 |
Q |
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| T |
33657290 |
tcatcattatttctcgttctacctcgagagtactatggatattattgcaattttattttacaccttcctctttctcttaattaccctcctcttgtatcca |
33657389 |
T |
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| Q |
170 |
ttcctaatgaaacacaataaaaacaaagccacgtccaagcctaaggttcccccaggttcaatgggttggccatatataggagaaactcttcaactttact |
269 |
Q |
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| T |
33657390 |
ttcataatgaaacacaataaacacagagccacgtccaagcctaaggttcccccaggttcaatgggttggccatatataggagaaactcttcaactttact |
33657489 |
T |
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| Q |
270 |
ctcaacaccctaacaccttctctgcttct |
298 |
Q |
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| T |
33657490 |
ctcaacatcctaacaccttctttgcttct |
33657518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 33698161 - 33698243
Alignment:
| Q |
216 |
ttcccccaggttcaatgggttggccatatataggagaaactcttcaactttactctcaacaccctaacaccttctctgcttct |
298 |
Q |
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| T |
33698161 |
ttcccccaggttcattgggttggccttatataggagaaacttttcaactctactctcaacaccctaacatcttctttgcttct |
33698243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 10422678 - 10422736
Alignment:
| Q |
224 |
ggttcaatgggttggccatatataggagaaactcttcaactttactctcaacaccctaa |
282 |
Q |
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| T |
10422678 |
ggttcaatgggttggccttacataggagaaacttttcaactttattctcaagaccctaa |
10422736 |
T |
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