View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11950_low_17 (Length: 296)
Name: NF11950_low_17
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 37360682 - 37360402
Alignment:
| Q |
1 |
gtgtatataacatgataaggcaattacaaataaatactttatagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37360682 |
gtgtatataacatgataaggcaattacaaataaatactttgtagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttag |
37360583 |
T |
|
| Q |
101 |
ttagttgtgcgagtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37360582 |
ttagttgtgcgagtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactca |
37360483 |
T |
|
| Q |
201 |
tgaaaccatttgtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagattcttgat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37360482 |
tgaaaccatttgtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagattcttgat |
37360402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 37367380 - 37367660
Alignment:
| Q |
1 |
gtgtatataacatgataaggcaattacaaataaatactttatagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37367380 |
gtgtatataacatgataaggcaattacaaataaatactttttagatttcaaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttag |
37367479 |
T |
|
| Q |
101 |
ttagttgtgcgagtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37367480 |
ttagttgtgcgagtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactca |
37367579 |
T |
|
| Q |
201 |
tgaaaccatttgtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagattcttgat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37367580 |
tgaaaccatttgtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgacctgattcttgat |
37367660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 50 - 281
Target Start/End: Complemental strand, 37382789 - 37382558
Alignment:
| Q |
50 |
aaatcatcatgattgttgtcaataacatgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacaccccaagcagcatactgctcat |
149 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37382789 |
aaatcatcatgattgttgtcaatgatatgataaaaatgttgtgacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgtgcat |
37382690 |
T |
|
| Q |
150 |
gaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccatttgtcatccatccacaacgcctttcttggattgctatgtc |
249 |
Q |
| |
|
||| ||||||||||| ||| | || ||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37382689 |
aaagagatctcaaaaaagctcttcctgctcctaactttgtatttacactcatgaaaccattagacatccatgcacaacgcctttcttggattgctatgtc |
37382590 |
T |
|
| Q |
250 |
ttttgcatgccatactcgaccagattcttgat |
281 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
37382589 |
ttttgcataccatactcgaccagattcttgat |
37382558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 76 - 281
Target Start/End: Complemental strand, 37375424 - 37375219
Alignment:
| Q |
76 |
atgataaaaatgttgagacagttagttagttgtgcgagtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccg |
175 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
37375424 |
atgataaaaatgttgagacagtaagttagtagtgccagtaccaagatcaacaccccaagcagcatactgctcatgaagagatctcaaaaaagctctccct |
37375325 |
T |
|
| Q |
176 |
gctcctaacgttgtatttacactcatgaaaccatttgtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagatt |
275 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
37375324 |
gctcctaaccttgtatttacactcatgaaaccattagacatccatgaacaacgcctttgttggattgctatgtcttttgcataccatactcgaccaagtt |
37375225 |
T |
|
| Q |
276 |
cttgat |
281 |
Q |
| |
|
|||||| |
|
|
| T |
37375224 |
cttgat |
37375219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 37386342 - 37386450
Alignment:
| Q |
113 |
gtaccaagatcaacacccc-aagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccattt |
211 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||| || |||||||||| |||||| ||||||||||| ||| |
|
|
| T |
37386342 |
gtaccaagatcaacacccccaagcagcatactgctcataaagggatctcaaaaaagctctccctgcacctaacgttgcatttactctcatgaaaccgttt |
37386441 |
T |
|
| Q |
212 |
gtcatccat |
220 |
Q |
| |
|
||||||| |
|
|
| T |
37386442 |
tgcatccat |
37386450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 113 - 281
Target Start/End: Original strand, 41229855 - 41230023
Alignment:
| Q |
113 |
gtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccatttg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| || ||||| ||||||| |||||||||||||||||| |
|
|
| T |
41229855 |
gtaccaagatcaacaccccaagcagcatactgctcataaagggatctcaaaaacgctctccctgcccctaatgttgtatctacactcatgaaaccattct |
41229954 |
T |
|
| Q |
213 |
tcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagattcttgat |
281 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
41229955 |
gcatccatccacaagctctttttgggattgctatgtcttttgcatgccacacacgaccagattcttgat |
41230023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 278
Target Start/End: Complemental strand, 39243922 - 39243756
Alignment:
| Q |
112 |
agtaccaagatcaacaccccaagcagcatactgctcatgaagggatctcaaaaatgctttcccggctcctaacgttgtatttacactcatgaaaccattt |
211 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| ||| |||||| |||||||| ||||| || || || ||||| |||||||||||||||||||||| |
|
|
| T |
39243922 |
agtaccaaaatcaacaccccattcagcatactgcacataaagggacctcaaaaaggctttgccagcacccaacgtagtatttacactcatgaaaccatga |
39243823 |
T |
|
| Q |
212 |
gtcatccatccacaacgcctttcttggattgctatgtcttttgcatgccatactcgaccagattctt |
278 |
Q |
| |
|
|||||||| |||||| |||||| |||| ||||||||||||||| ||| | ||| |||||||||| |
|
|
| T |
39243822 |
gtcatccagccacaagccctttcagggatccctatgtcttttgcataccacaatcggccagattctt |
39243756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University