View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11950_low_19 (Length: 273)

Name: NF11950_low_19
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11950_low_19
NF11950_low_19
[»] chr2 (4 HSPs)
chr2 (8-152)||(41282877-41283019)
chr2 (10-141)||(41282649-41282779)
chr2 (10-106)||(1233749-1233845)
chr2 (91-152)||(33361052-33361111)
[»] scaffold0178 (2 HSPs)
scaffold0178 (1-152)||(18486-18635)
scaffold0178 (13-106)||(19131-19226)
[»] chr5 (1 HSPs)
chr5 (10-153)||(120077-120218)
[»] chr3 (7 HSPs)
chr3 (89-153)||(8922888-8922950)
chr3 (89-153)||(41325826-41325888)
chr3 (89-153)||(50107572-50107634)
chr3 (89-144)||(1772880-1772933)
chr3 (89-152)||(8923629-8923690)
chr3 (89-152)||(23514488-23514549)
chr3 (89-152)||(34329130-34329191)
[»] chr4 (2 HSPs)
chr4 (84-152)||(5469961-5470027)
chr4 (107-151)||(45620874-45620918)
[»] chr8 (2 HSPs)
chr8 (89-152)||(38443039-38443100)
chr8 (108-152)||(38443618-38443662)
[»] chr7 (1 HSPs)
chr7 (89-133)||(48204975-48205017)
[»] chr1 (1 HSPs)
chr1 (89-152)||(1764521-1764582)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 41282877 - 41283019
Alignment:
Q  8 gcgtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatgag 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||  |    
T  41282877 gcgtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaatctcaaccctttgtttaatttattccacatgtcacacatccat--g 41282974  T
Q  108 atggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||    
T  41282975 atggtaaatgatgtaaattgagcaaacttaaatggagtaaagatg 41283019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 41282779 - 41282649
Alignment:
Q  10 gtgttgtttcagatacaagagagtaacaagtttg-ttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatgaga 108  Q
    |||||||||||||||||||| ||||| ||| ||| ||||||||| | |||||||  ||| |||||||| |||||||||| ||| ||||||||| ||  ||    
T  41282779 gtgttgtttcagatacaagaaagtaataagattgtttttttctatgtttttaatctcaatcctttgttcaatttattccacatatcacacatctat--ga 41282682  T
Q  109 tggtaaatggtgtaaattgagcaaatttaaatg 141  Q
    ||||||||||||||||| ||||||| |||||||    
T  41282681 tggtaaatggtgtaaatggagcaaacttaaatg 41282649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 106
Target Start/End: Complemental strand, 1233845 - 1233749
Alignment:
Q  10 gtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatga 106  Q
    |||||| ||| |||||||||||  ||| |||||||||||||||||||||||||   |||| ||| ||| |||| | || | ||||||||||||||||    
T  1233845 gtgttgcttcggatacaagagaagaactagtttgttttttctaaggttttaatcttaaccatttattttatttttgccacgtgtcacacatccatga 1233749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 33361111 - 33361052
Alignment:
Q  91 tgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    ||||||||||||||||   |||||||||| |||||||||||||  ||||||||| |||||||    
T  33361111 tgtcacacatccatgaa--ggtaaatggtataaattgagcaaaggtaaatggagcaaagatg 33361052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 18635 - 18486
Alignment:
Q  1 ggaggcagcgtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacat 100  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||| ||||||||||||    
T  18635 ggaggcggcgtgttgtttcagctacaagagagtaacaagtttgttttttctaaggttttaatctcagccctttgtttaatttattccacatgtcacacat 18536  T
Q  101 ccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    ||||  |||||||||||||||||||||| |||| ||||||||||||||||||    
T  18535 ccat--gatggtaaatggtgtaaattgaacaaacttaaatggagtaaagatg 18486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 19131 - 19226
Alignment:
Q  13 ttgtttcagatacaagagagtaacaagtttgtttt--ttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatga 106  Q
    |||||| |||||||||||||||| ||| |||||||  ||||||| |||||||  || |||||||||||||||||| | ||||||||||||||||||    
T  19131 ttgttttagatacaagagagtaataagattgttttttttctaagtttttaatctcagccctttgtttaatttattacacatgtcacacatccatga 19226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 120218 - 120077
Alignment:
Q  10 gtgttgtttcagatacaagagagtaacaagtttgttttttctaaggttttaattccaaccctttgtttaatttattccgcatgtcacacatccatgagat 109  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||| ||| ||| |||| ||||  ||||||| |||| || |  |    
T  120218 gtgttgtttcagatacaagagaggaacaagtttgttttttctaaagttttaatctcaaccatttattttattttttccatatgtcacgcatctataactt 120119  T
Q  110 ggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 153  Q
    |  |||||| |||||||||| |||  ||||||||| ||||||||    
T  120118 g--aaatggggtaaattgaggaaagctaaatggagcaaagatga 120077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 8922950 - 8922888
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 153  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||  ||||||||||||||||||    
T  8922950 catgtcacacatccatga--tgataaatggggtaaattgagcaaacctaaatggagtaaagatga 8922888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 41325888 - 41325826
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 153  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||  ||||||||||||||||||    
T  41325888 catgtcacacatccatga--tgataaatggggtaaattgagcaaacctaaatggagtaaagatga 41325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 50107634 - 50107572
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatga 153  Q
    ||||||||||||||||||  || ||||||| ||||||||||||||  |||||| |||||||||||    
T  50107634 catgtcacacatccatga--tgataaatggggtaaattgagcaaacctaaatgtagtaaagatga 50107572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 1772933 - 1772880
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggag 144  Q
    ||||||||| |||||||| |  |||||||| |||||||||||||| ||||||||||    
T  1772933 catgtcacatatccatgata--gtaaatggggtaaattgagcaaacttaaatggag 1772880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 8923629 - 8923690
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    ||||||||||||||||||  |||||||||| |||||| |||||||   |||||||| |||||||    
T  8923629 catgtcacacatccatga--tggtaaatggggtaaatggagcaaacccaaatggagcaaagatg 8923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 23514488 - 23514549
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    |||||||||||||||||| |  |||||||| ||||||||||||||   |||||||| |||||||    
T  23514488 catgtcacacatccatgata--gtaaatggggtaaattgagcaaaggcaaatggagcaaagatg 23514549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 34329130 - 34329191
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    |||||||||||||||||| |  |||||||| ||||||||||||||  |||||| || |||||||    
T  34329130 catgtcacacatccatgata--gtaaatggagtaaattgagcaaaaataaatgaagcaaagatg 34329191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 5469961 - 5470027
Alignment:
Q  84 ttccgcatgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    |||| |||||||||||||||| |  ||||||||||  ||||||||||||| |||||||||| |||||||    
T  5469961 ttccacatgtcacacatccataa--tggtaaatgggataaattgagcaaacttaaatggagcaaagatg 5470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 45620918 - 45620874
Alignment:
Q  107 gatggtaaatggtgtaaattgagcaaatttaaatggagtaaagat 151  Q
    |||||||||||   |||||||||||||||||||||||| ||||||    
T  45620918 gatggtaaatgagataaattgagcaaatttaaatggagcaaagat 45620874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 38443100 - 38443039
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    ||||||||||||||||||  |||||||||| |||||| ||||| | |||||||||| |||||||    
T  38443100 catgtcacacatccatga--tggtaaatggggtaaatggagcagacttaaatggagcaaagatg 38443039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 38443618 - 38443662
Alignment:
Q  108 atggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    ||||||||||| |||||| ||||||| |||||||||| |||||||    
T  38443618 atggtaaatggggtaaatggagcaaacttaaatggagcaaagatg 38443662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 48204975 - 48205017
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaa 133  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||    
T  48204975 catgtcacacatccatga--tggtaaatggtgtaaatggagcaaa 48205017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 1764582 - 1764521
Alignment:
Q  89 catgtcacacatccatgagatggtaaatggtgtaaattgagcaaatttaaatggagtaaagatg 152  Q
    ||||||| ||||||||||  || ||||| | |||||||||||||| |||||||||| |||||||    
T  1764582 catgtcatacatccatga--tgataaatagggtaaattgagcaaacttaaatggagcaaagatg 1764521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University