View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11950_low_2 (Length: 622)
Name: NF11950_low_2
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 4 - 607
Target Start/End: Complemental strand, 35409546 - 35408943
Alignment:
| Q |
4 |
ggagaagcagagatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttagga |
103 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409546 |
ggagaatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttagga |
35409447 |
T |
|
| Q |
104 |
accgatgtggccatggggtttcaccatatgaattgctaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaaca |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409446 |
accgatgtggccatggagtttcaccatatgaattgttaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaaca |
35409347 |
T |
|
| Q |
204 |
gtttaatatgcgaagaaagaccagccacggaatatcacacctttgttttccaccannnnnnnctcacggaatctttactacttactagtagatcaagaca |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409346 |
gtttaatatgcgaagaaagaccagccacggaatatcacacctttgttttccaccatttttttctcacggaatctttactacttactagtagatcaagaca |
35409247 |
T |
|
| Q |
304 |
tttatgccgtgcagaaatcatttgaagatgaattttgcatagttaaattcagtcagaaatcagcacattgattaagaataaagtatgaaattgctcaaga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409246 |
tttatgccgtgcagaaatcatttgaagatgaattttgcatagttaaattcagtcagaaatcagcacattgattaagaataaagtatgaaattgctcaaga |
35409147 |
T |
|
| Q |
404 |
ccttgaaagcagtttaacaaaaaacagatgtatgttgaaatactaaaccatctattctgttcaaattcgtgaacatatattaaagataaaacatatattt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35409146 |
ccttgaaagcagtttaacaaaaaacagatgtatgttgaaatactaaaccatctattctgttcaaattcgtgaacatataataaagataaaacatatattt |
35409047 |
T |
|
| Q |
504 |
gaagaacagttacaatcattatatttaagatcccttcttcgattgtctaggatgcaccaaattatatttaggatcatgttagatgcattgagattttagg |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35409046 |
gaagaacagttacaatcattatatttaagatcccttcttcaattgtttaggatgcaccaaattatatttaggatcatgttagatgcattgagattttagg |
35408947 |
T |
|
| Q |
604 |
tctt |
607 |
Q |
| |
|
|||| |
|
|
| T |
35408946 |
tctt |
35408943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 35408185 - 35407975
Alignment:
| Q |
3 |
tggagaagcagagatcattgatgcattcaaccaattttcaaatgacatgaaagatattgagaaggagattgacagaagaaatgccgatccaaaacttagg |
102 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35408185 |
tggagaatctgagatcattgatgcattcaaccaattttcaatggacatgaaaaatattgagaaggagattgacagaagaaatatcgatccaaaacttagg |
35408086 |
T |
|
| Q |
103 |
aaccgatgtggccatggggtttcaccatatgaattgctaatacctagctcaggatgtggcgccactggacgaggagtgccaaatagtgcaacagcctaac |
202 |
Q |
| |
|
|| |||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||| || |||||||||||| | ||||||||||||||||||||||| | |
|
|
| T |
35408085 |
aatcgatgtggccatggagtttcaccatatgaactgcttataccaagctcgggatgcggtgccactggacgatgggtgccaaatagtgcaacagcctagc |
35407986 |
T |
|
| Q |
203 |
agtttaatatg |
213 |
Q |
| |
|
||||||||||| |
|
|
| T |
35407985 |
agtttaatatg |
35407975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University