View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11950_low_21 (Length: 240)

Name: NF11950_low_21
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11950_low_21
NF11950_low_21
[»] chr3 (11 HSPs)
chr3 (2-145)||(7437024-7437169)
chr3 (2-145)||(49458846-49459000)
chr3 (1-141)||(21385958-21386109)
chr3 (1-145)||(43173382-43173528)
chr3 (1-144)||(4962177-4962331)
chr3 (1-145)||(33693745-33693903)
chr3 (42-141)||(1666412-1666511)
chr3 (59-144)||(32766503-32766588)
chr3 (45-87)||(49296607-49296649)
chr3 (45-87)||(53836451-53836493)
chr3 (42-145)||(27162847-27162950)
[»] chr6 (9 HSPs)
chr6 (1-141)||(16439180-16439322)
chr6 (42-141)||(31975224-31975323)
chr6 (42-145)||(31534573-31534676)
chr6 (1-141)||(28900302-28900452)
chr6 (54-145)||(32567794-32567885)
chr6 (1-89)||(2607387-2607486)
chr6 (65-141)||(2607485-2607561)
chr6 (42-88)||(24195580-24195626)
chr6 (42-88)||(15381129-15381175)
[»] chr4 (16 HSPs)
chr4 (1-142)||(46862414-46862566)
chr4 (21-145)||(50517602-50517728)
chr4 (42-145)||(26955782-26955885)
chr4 (42-145)||(29509528-29509631)
chr4 (42-145)||(32890408-32890511)
chr4 (42-145)||(12754838-12754941)
chr4 (42-145)||(24965957-24966060)
chr4 (42-144)||(33139327-33139436)
chr4 (54-137)||(14334856-14334939)
chr4 (42-145)||(22480160-22480262)
chr4 (42-145)||(35517984-35518087)
chr4 (1-141)||(26490746-26490897)
chr4 (45-87)||(8084684-8084726)
chr4 (45-87)||(23671131-23671173)
chr4 (45-87)||(29469656-29469698)
chr4 (45-134)||(42937100-42937188)
[»] chr1 (21 HSPs)
chr1 (2-145)||(49452526-49452680)
chr1 (2-145)||(35176741-35176887)
chr1 (42-142)||(32759549-32759649)
chr1 (2-145)||(42303863-42304000)
chr1 (1-144)||(47371036-47371190)
chr1 (58-145)||(48965982-48966069)
chr1 (42-144)||(2292740-2292842)
chr1 (1-145)||(49236463-49236618)
chr1 (50-141)||(8122488-8122579)
chr1 (55-142)||(3593781-3593868)
chr1 (45-141)||(19863426-19863522)
chr1 (80-145)||(28403416-28403481)
chr1 (2-94)||(28403495-28403598)
chr1 (42-145)||(15927588-15927690)
chr1 (42-144)||(25254062-25254175)
chr1 (45-87)||(1242847-1242889)
chr1 (45-87)||(5208839-5208881)
chr1 (45-87)||(8147855-8147897)
chr1 (45-87)||(11578666-11578708)
chr1 (45-87)||(26758129-26758171)
chr1 (45-87)||(41353934-41353976)
[»] chr2 (13 HSPs)
chr2 (21-145)||(18727084-18727210)
chr2 (42-145)||(30850888-30850991)
chr2 (4-141)||(34342726-34342875)
chr2 (42-144)||(38295202-38295304)
chr2 (6-145)||(2308020-2308170)
chr2 (2-145)||(9731424-9731578)
chr2 (1-145)||(42242278-42242433)
chr2 (42-145)||(31846633-31846736)
chr2 (42-141)||(40830164-40830262)
chr2 (42-145)||(2103798-2103900)
chr2 (59-142)||(37654866-37654949)
chr2 (42-87)||(18899469-18899514)
chr2 (45-87)||(15224529-15224571)
[»] chr8 (21 HSPs)
chr8 (1-144)||(24082678-24082823)
chr8 (29-141)||(18984847-18984961)
chr8 (1-145)||(12737550-12737704)
chr8 (3-145)||(8029320-8029472)
chr8 (1-145)||(6387367-6387522)
chr8 (42-144)||(42423737-42423839)
chr8 (1-141)||(27974436-27974588)
chr8 (1-141)||(28031705-28031857)
chr8 (44-145)||(3007286-3007387)
chr8 (42-141)||(12521876-12521974)
chr8 (42-145)||(44977262-44977365)
chr8 (2-141)||(27869407-27869557)
chr8 (42-145)||(41394395-41394498)
chr8 (74-141)||(27876563-27876630)
chr8 (74-141)||(28016744-28016811)
chr8 (1-42)||(27878191-27878232)
chr8 (1-42)||(27915135-27915176)
chr8 (1-42)||(27961554-27961595)
chr8 (1-42)||(28018372-28018413)
chr8 (44-137)||(35446919-35447012)
chr8 (45-87)||(19484706-19484748)
[»] chr7 (13 HSPs)
chr7 (42-145)||(21486668-21486771)
chr7 (1-141)||(23017463-23017614)
chr7 (3-139)||(31445826-31445972)
chr7 (42-142)||(43172607-43172707)
chr7 (42-145)||(42611045-42611152)
chr7 (61-145)||(16710072-16710156)
chr7 (61-145)||(17684308-17684392)
chr7 (56-141)||(5771652-5771737)
chr7 (45-134)||(37915576-37915665)
chr7 (42-88)||(42043833-42043879)
chr7 (45-87)||(4639440-4639482)
chr7 (45-87)||(14741944-14741986)
chr7 (1-42)||(42610991-42611032)
[»] chr5 (9 HSPs)
chr5 (50-145)||(29716369-29716464)
chr5 (43-144)||(15285988-15286089)
chr5 (59-145)||(3032651-3032737)
chr5 (44-86)||(4841032-4841074)
chr5 (45-87)||(28622734-28622776)
chr5 (59-145)||(31913917-31914003)
chr5 (42-144)||(35701756-35701857)
chr5 (45-87)||(37797684-37797726)
chr5 (58-106)||(21490141-21490189)
[»] scaffold0573 (1 HSPs)
scaffold0573 (1-141)||(9342-9492)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-145)||(89764-89919)
[»] scaffold0024 (1 HSPs)
scaffold0024 (74-142)||(136086-136154)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 7437169 - 7437024
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattag 99  Q
    |||||||||||||||||| ||||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||     
T  7437169 ttttttggatggttttatggatggcttaaacttaaagacttatgattttgtgcgttaatttttgtattttgatgctaagttaagcataacgttttattat 7437070  T
Q  100 ggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||    
T  7437069 ggtagtttgatataatttgtctttgtaattaagtcatattttgcac 7437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 49458846 - 49459000
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatg 90  Q
    |||||||||||||||||| |||| |||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  49458846 ttttttggatggttttatggatgacttaaacttagagacttatgaaatttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatg 49458945  T
Q  91 ttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||||    
T  49458946 ttttactatggtagtttgatataatttccctttgtaattaagtcatattttgcac 49459000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 21386109 - 21385958
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagact-----------tgattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    |||||| |||||||||||| |||| ||||||||||||||||           | |||||||| ||||||||||||||||||||||||||||||||||||     
T  21386109 ctttttcggatggttttatggatgacttaaacttagagacttatgaaacttattattttgtgcgttaatttttgtattttgatgctaagttgagcataac 21386010  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  21386009 gttttattatggtagtttggtataattttcctttgtaattaagtcatatttt 21385958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 43173382 - 43173528
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttatta 98  Q
    ||||||||||||||||||| |||| |||||||||||| ||||  ||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||| |    
T  43173382 cttttttggatggttttatggatgacttaaacttagaaacttatgattttgtgcgttaattttcgtattttgatgttaagttgagcataacgttttatca 43173481  T
Q  99 gggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
     ||||||||| |||| ||| | |||||| | ||||||||||||||||    
T  43173482 tggtagtttgttatattttgcttttgtattcaagtcatattttgcac 43173528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 4962331 - 4962177
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagacttg-----------attttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| || ||||||||||||||||||||           |||||||| |||||||||||||||||||||||||||||| |||||     
T  4962331 cttttttggatggttttatggaaggcttaaacttagagacttgtgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgaacataac 4962232  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgca 144  Q
     |||||||| ||||||||| ||||||||  ||| |||||||||||||||||||||    
T  4962231 attttattacggtagtttggtataatttatcttggtaattaagtcatattttgca 4962177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 33693745 - 33693903
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| ||||||||||||||||||||||           ||||||||| ||||||||||||||||||||| ||||||||| ||||     
T  33693745 cttttttggatggttttatggatggcttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgttaagttgagtataac 33693844  T
Q  90 g---ttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |   |||||||| | ||||||| |||||||| |||||||||||||||||||||||||||    
T  33693845 gacgttttattatgatagtttggtataatttgcctttgtaattaagtcatattttgcac 33693903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 1666412 - 1666511
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||| |||||| | | ||||||| |||||||| ||||||||| || ||||||||||    
T  1666412 tgattttgtgcgttaatttttgtattttgatgctaagttaagcataatattttataatgatagtttgttataatttacctttgtaagtatgtcatatttt 1666511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 144
Target Start/End: Original strand, 32766503 - 32766588
Alignment:
Q  59 ttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgca 144  Q
    ||||||||||||||| |||||||||||||| ||||||||| ||||| ||  ||||||||  ||||| |||||||||||||||||||    
T  32766503 ttttgtattttgatgttaagttgagcataacgttttattatggtagattagtataatttgtctttgcaattaagtcatattttgca 32766588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 49296607 - 49296649
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  49296607 ttttgtgtgttaatttttctattttgatactaagttaagcata 49296649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 53836451 - 53836493
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  53836451 ttttgtgtgttaatttttctattttgatactaagttaagcata 53836493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 27162847 - 27162950
Alignment:
Q  42 tgattttgtgtgttaatttttgt-attttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattt 140  Q
    |||||||| | |||||||||| | |||||||||||||| |||||||||   ||||||| ||| ||| | |||| |||  |||| ||||||||| ||||||    
T  27162847 tgattttgcgagttaattttttttattttgatgctaag-tgagcataacactttattatggtggttgggtatactttgtctttataattaagttatattt 27162945  T
Q  141 tgcac 145  Q
    |||||    
T  27162946 tgcac 27162950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16439180 - 16439322
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttatta 98  Q
    ||||||||||||||||||| |||| || ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16439180 cttttttggatggttttatggatgtctgaaacttagagacttctgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttatta 16439279  T
Q  99 gggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
     ||||||||| ||||||||  ||||||||||||||||||||||    
T  16439280 tggtagtttggtataatttatctttgtaattaagtcatatttt 16439322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 31975323 - 31975224
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  31975323 tgattttgtgcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttgatataatttgcctttgtaattaagtcatatttt 31975224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 31534676 - 31534573
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| |||| ||||||||||||||||||    
T  31534676 tgattttgtgcgctaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtgtaatttgccttagtaattaagtcatatttt 31534577  T
Q  142 gcac 145  Q
    ||||    
T  31534576 gcac 31534573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28900452 - 28900302
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttatta 98  Q
    |||||||||||||||||||  ||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  28900452 cttttttggatggttttatgaatgacttaaacttagagacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatattttatta 28900353  T
Q  99 ggg--------tagtttgatataattttcctttgtaattaagtcatatttt 141  Q
     ||        ||||||||| ||||||  ||||| ||||||||||||||||    
T  28900352 tggatttatgttagtttgatgtaatttgtctttgaaattaagtcatatttt 28900302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 32567885 - 32567794
Alignment:
Q  54 ttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||| |||||||||||||| || ||||||| ||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||    
T  32567885 ttaatttttttattttgatgctaaatttagcataacgttttattatgatagtttgatatattttgcctttgtaattaagtcatattttgcac 32567794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 2607387 - 2607486
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    |||||||||||| |||||| |||| |||||||||||||||||           ||||||||| |||||||||||||||||||||||||||||||||||||    
T  2607387 cttttttggatgattttatggatgacttaaacttagagacttatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataat 2607486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 2607485 - 2607561
Alignment:
Q  65 attttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||||||||||||||||||||   ||||| ||||||||||||||||||| |||| |||||||| | ||||||    
T  2607485 attttgatgctaagttgagcataatggaatattatggtagtttgatataatttttctttataattaagccgtatttt 2607561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 24195580 - 24195626
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataa 88  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  24195580 tgattttgtgcgttaatttttgtattttgatgctaagttgagaataa 24195626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 15381175 - 15381129
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataa 88  Q
    ||||||||||  |||||||||||||||||||||| ||||||||||||    
T  15381175 tgattttgtgcattaatttttgtattttgatgctgagttgagcataa 15381129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 46862566 - 46862414
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    |||||||||||| |||||| |||| |||||||||||||||||           |||||||||||||||| |||||||||||||||||||||||| |||||    
T  46862566 cttttttggatgattttatggatgacttaaacttagagacttatgaaacttatgattttgtgtgttaatctttgtattttgatgctaagttgagtataat 46862467  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttg 142  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  46862466 gttttattatggtagtttgatataatttgcctttgtaattaagtcatattttg 46862414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 50517602 - 50517728
Alignment:
Q  21 gatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataatttt 118  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||| || |||||      
T  50517602 gatggcttaaacttagaaacttatgattttgtgtgttaatttttgtattttgatgttaagttgagcataatattttattatggtagtttaatgtaattcg 50517701  T
Q  119 cctttgtaattaagtcatattttgcac 145  Q
    |||||||||||||||||||||||||||    
T  50517702 cctttgtaattaagtcatattttgcac 50517728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 26955782 - 26955885
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||  ||||||||||||||||||||||    
T  26955782 tgattttgtgcgttagtttttatattttgatgctaagttgagcataatgttttattatggtagtttgatatattttatctttgtaattaagtcatatttt 26955881  T
Q  142 gcac 145  Q
    ||||    
T  26955882 gcac 26955885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 29509631 - 29509528
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||| |||||||    
T  29509631 tgattttgggcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttgcccttgtaattaagttatatttt 29509532  T
Q  142 gcac 145  Q
    ||||    
T  29509531 gcac 29509528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 32890408 - 32890511
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||  | |||||||||||| |||||||    
T  32890408 tgattttgggcgttaatttttgtattttgatgctaagttgagcataatgttttattatggtagtttggtataatttgtccttgtaattaagttatatttt 32890507  T
Q  142 gcac 145  Q
    ||||    
T  32890508 gcac 32890511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 12754838 - 12754941
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||||||||||||||||||||| || ||||||| ||| ||||||||| ||||||||| |||||||| |||||| ||||||||||||||||    
T  12754838 tgattttgtgcgttaatttttgtattttgatgttaggttgagcgtaacgttttattatggtagtttggtataatttgcctttgaaattaagtcatatttt 12754937  T
Q  142 gcac 145  Q
    ||||    
T  12754938 gcac 12754941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 24966060 - 24965957
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||  | ||||||||||||||||||||    
T  24966060 tgattttgtgcgttaattttggtattttgatgttaagttgagcataacgttttattatggtagtttggtataatttgtcgttgtaattaagtcatatttt 24965961  T
Q  142 gcac 145  Q
    ||||    
T  24965960 gcac 24965957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 33139327 - 33139436
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggt-------agtttgatataattttcctttgtaattaagtc 134  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||       |||||| |||||||||||||||||||||||||    
T  33139327 tgattttgtgcgttaatttttgtattttgatgctacgttgagcataacgttttattatggtagtttgcagtttggtataattttcctttgtaattaagtc 33139426  T
Q  135 atattttgca 144  Q
    ||||||||||    
T  33139427 atattttgca 33139436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 137
Target Start/End: Original strand, 14334856 - 14334939
Alignment:
Q  54 ttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcata 137  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | |||||||||||||||||| ||||||||| |||||||||    
T  14334856 ttaatttttgtattttgatgcttagttgagcataacgttttataatggtagtttgatataatttgcctttgtaagtaagtcata 14334939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 22480160 - 22480262
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||  ||||| |||  |||| |||||||||||||||||    
T  22480160 tgattttgcgtgttaatttt-gtattttgatgataagttgagcataatgttttattacggtagttgtatatactttgtctttataattaagtcatatttt 22480258  T
Q  142 gcac 145  Q
    ||||    
T  22480259 gcac 22480262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 35518087 - 35517984
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||| |||| | || | ||| || |||||||||||||||||||||||    
T  35518087 tgattttatgtgctaatttttgtattttgatgctaagttgaacataatattttattatggtaatctggtttaacttgcctttgtaattaagtcatatttt 35517988  T
Q  142 gcac 145  Q
    ||||    
T  35517987 gcac 35517984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 26490897 - 26490746
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| |||| |||||||||||||||||           ||||||||   |||||||||||||||||||| |||||||   ||||     
T  26490897 cttttttggatggttttatggatgacttaaacttagagacttatgaaacttatgattttgtacattaatttttgtattttgatgttaagttg---ataac 26490801  T
Q  90 gttttattagg---gtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
     |||||||| |   ||||||||| |||||||| ||||||||||||||||||||||    
T  26490800 attttattatggtagtagtttgacataatttttctttgtaattaagtcatatttt 26490746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 8084684 - 8084726
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  8084684 ttttgtgtgttaatttttctattttgatactaagttaagcata 8084726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 23671173 - 23671131
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  23671173 ttttgtgtgttaatttttctattttgatactaagttaagcata 23671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 29469656 - 29469698
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  29469656 ttttgtgtgttaatttttctattttgatactaagttaagcata 29469698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 42937188 - 42937100
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtc 134  Q
    |||||||||||||||||| ||||||||| ||||||  ||||| |  |||| ||| ||||||||| |||| ||| | ||| ||||||||||    
T  42937188 ttttgtgtgttaatttttctattttgatactaagtgaagcat-acatttttttatggtagtttggtatactttgcatttataattaagtc 42937100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 49452680 - 49452526
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatg 90  Q
    |||||||||||||||||| |||| |||||||||||||||||           ||||| ||| |||||||||||||||||||||||||||||||||||||     
T  49452680 ttttttggatggttttatggatgacttaaacttagagacttatgaaacttatgatttggtgcgttaatttttgtattttgatgctaagttgagcataata 49452581  T
Q  91 ttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  49452580 ttttattacggtagtttgatataatttatctttgtaattaagtcatattttgcac 49452526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 35176887 - 35176741
Alignment:
Q  2 ttttttggatggttttattgatggcttaaactta-gagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttatta 98  Q
    |||||||||||||||||| | || || ||||||| |||||||  ||||||||| || |||||||||||||||||||||||||||||||||  ||||||||    
T  35176887 ttttttggatggttttatgggtgactaaaacttaagagacttatgattttgtgcgtgaatttttgtattttgatgctaagttgagcataacattttatta 35176788  T
Q  99 gggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
     ||||||||| |||||||| ||||||||||||| |||||||||||||    
T  35176787 tggtagtttgctataatttgcctttgtaattaaatcatattttgcac 35176741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 142
Target Start/End: Complemental strand, 32759649 - 32759549
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  32759649 tgattttgtgcgttaatttttgtattttgatgctaagtttagcataacgttttattatggtagtttggtataatttgcctttgtaattaagtcatatttt 32759550  T
Q  142 g 142  Q
    |    
T  32759549 g 32759549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 42304000 - 42303863
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattag 99  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||  ||||||||     
T  42304000 ttttttggatggttttatggatggcttaaacttagagacttatgattttgtgcgttaatttttgtattttgaagctaagttgagcataacattttatta- 42303902  T
Q  100 ggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
           || ||||||||  ||||||||||||||||||||||||||    
T  42303901 -------tggtataatttgtctttgtaattaagtcatattttgcac 42303863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 47371190 - 47371036
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagact-----------tgattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| |||| |||||||||| |||||           | |||||||| |||||||||| | ||||||||||||||||||||||||    
T  47371190 cttttttggatggttttatggatgacttaaacttatagacttatgaaacttataattttgtgcgttaatttttatgttttgatgctaagttgagcataat 47371091  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgca 144  Q
    ||||||||| ||||||||| |||||||| || || ||||||||||||||||||||    
T  47371090 gttttattatggtagtttggtataatttgccgttttaattaagtcatattttgca 47371036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 48966069 - 48965982
Alignment:
Q  58 tttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||  |||||||| |||||||||||||||||||||||||||    
T  48966069 tttttgtattttgatgctaagttgaacataatgttttattatggtagtttagtataatttgcctttgtaattaagtcatattttgcac 48965982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 2292842 - 2292740
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||||||||||||||||||| |||||||||| ||||| ||||||||| ||||||||| |||| ||| | |||||||||||||||||||||    
T  2292842 tgattttgtgcgttaatttttgtattttgacgctaagttgaacataacgttttattatggtagtttggtatagtttgcatttgtaattaagtcatatttt 2292743  T
Q  142 gca 144  Q
    |||    
T  2292742 gca 2292740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 49236618 - 49236463
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| |||||||||||||||| |||||           |||||||   ||||||||||||||||||||||||||| ||||||||     
T  49236618 cttttttggatggttttatggatggcttaaacttagggacttatgaaacttatgattttggacgttaatttttgtattttgatgctaagtagagcataac 49236519  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||| ||||||||  ||||||||| |||||| |||||| ||||||||||||    
T  49236518 gttttattatggtagtttagtataatttttctttgttattaagccatattttgcac 49236463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 8122488 - 8122579
Alignment:
Q  50 tgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |  |||||||| |||||||| ||||||||| |||||||||||||    
T  8122488 tgtgttaatttttgtattttgatgctaagttgagcataacgttttataatagtagtttggtataatttgcctttgtaagtaagtcatatttt 8122579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 142
Target Start/End: Original strand, 3593781 - 3593868
Alignment:
Q  55 taatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttg 142  Q
    |||||||||||||||| || |||||||| ||| ||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  3593781 taatttttgtattttggtgttaagttgaacattatgttttattatggtagtttggtataatttgcctttgtaattaagtcatattttg 3593868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 141
Target Start/End: Original strand, 19863426 - 19863522
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||  |||||||||||||||||||| ||||||||||||||  |||||||| |||||||| |||||||||  ||||||||||| ||||||||||    
T  19863426 ttttgtgcattaatttttgtattttgatgttaagttgagcataacattttattatggtagtttaatataatttgtctttgtaattatgtcatatttt 19863522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 28403481 - 28403416
Alignment:
Q  80 tgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||    
T  28403481 tgagcataaagttttattatggtagtttggtataatttttctttgtaattaagtcatattttgcac 28403416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 28403598 - 28403495
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatg 90  Q
    |||||||||||||||||| |||| |||||||||||||||||           ||||||||| |||||||||||||||||||||||||||||||||||| |    
T  28403598 ttttttggatggttttatggatgacttaaacttagagacttatgaaaattatgattttgtgcgttaatttttgtattttgatgctaagttgagcataaag 28403499  T
Q  91 tttt 94  Q
    ||||    
T  28403498 tttt 28403495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 15927588 - 15927690
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||| || |||||||||| |||||||||||||| ||||| |||   ||||||||  |||||||| ||||||||  ||||||||||||||||||||||    
T  15927588 tgattttttgcgttaatttttatattttgatgctaaattgagaataca-ttttattatagtagtttggtataatttgtctttgtaattaagtcatatttt 15927686  T
Q  142 gcac 145  Q
    ||||    
T  15927687 gcac 15927690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 25254062 - 25254175
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattag-----------ggtagtttgatataattttcctttgtaatta 130  Q
    |||||||||| | |||||||||| |||||||||||||||||||||||  |||||||||           ||||||||| |||||| | ||||||||||||    
T  25254062 tgattttgtgcgctaatttttgttttttgatgctaagttgagcataacattttattagcataacattttggtagtttggtataatgtgcctttgtaatta 25254161  T
Q  131 agtcatattttgca 144  Q
    ||||||||||||||    
T  25254162 agtcatattttgca 25254175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 1242889 - 1242847
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  1242889 ttttgtgtgttaatttttctattttgatactaagttaagcata 1242847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 5208881 - 5208839
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  5208881 ttttgtgtgttaatttttctattttgatactaagttaagcata 5208839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 8147855 - 8147897
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  8147855 ttttgtgtgttaatttttctattttgatactaagttaagcata 8147897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 11578708 - 11578666
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  11578708 ttttgtgtgttaatttttctattttgatactaagttaagcata 11578666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 26758129 - 26758171
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  26758129 ttttgtgtgttaatttttctattttgatactaagttaagcata 26758171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 41353934 - 41353976
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  41353934 ttttgtgtgttaatttttctattttgatactaagttaagcata 41353976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 18727210 - 18727084
Alignment:
Q  21 gatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataatttt 118  Q
    |||| |||||||||||||||||  ||||||||| ||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |     
T  18727210 gatgacttaaacttagagacttatgattttgtgcgttcatttttgtattttgatgctaagttgaacataacgttttattatggtagtttgatataatctg 18727111  T
Q  119 cctttgtaattaagtcatattttgcac 145  Q
    |||||||||||||||||||||||||||    
T  18727110 cctttgtaattaagtcatattttgcac 18727084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 30850888 - 30850991
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||  ||||||||||||||||||||||    
T  30850888 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataacgttttattatggtagtttcatatattttgtctttgtaattaagtcatatttt 30850987  T
Q  142 gcac 145  Q
    ||||    
T  30850988 gcac 30850991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 34342726 - 34342875
Alignment:
Q  4 ttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgtt 92  Q
    |||||||| ||||||| ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  34342726 ttttggatagttttatagatggcttaaacttagagacttatgaaatttatgattttgtgtgttaatttttgtattttgatgctaagttgaacataatatt 34342825  T
Q  93 ttatta-gggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||| |||||||||| ||||||||  ||||||||||||||||||||||    
T  34342826 ttattatgggtagtttgttataatttgtctttgtaattaagtcatatttt 34342875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 144
Target Start/End: Complemental strand, 38295304 - 38295202
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| |||||||||||||||  |||| |||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||||||    
T  38295304 tgattttgtgcgttaatttttgtattacgatgttaagttgagcataatgttttattatggtagtttggtataatttgtctttgtaattaagtcatatttt 38295205  T
Q  142 gca 144  Q
    |||    
T  38295204 gca 38295202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 145
Target Start/End: Complemental strand, 2308170 - 2308020
Alignment:
Q  6 ttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgtttt 94  Q
    ||||||| |||||| ||||||||||||||||||||||           ||||||||| ||||||||||||| |||||||||||||  ||||||| |||||    
T  2308170 ttggatgtttttatggatggcttaaacttagagacttatgaaacttatgattttgtgagttaatttttgtaatttgatgctaagtgtagcataacgtttt 2308071  T
Q  95 attagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |||| ||||||||| |||||||| |||||||||||||| ||||||||||||    
T  2308070 attatggtagtttggtataatttacctttgtaattaagacatattttgcac 2308020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 9731424 - 9731578
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatg 90  Q
    |||||||||||||||||| |||| |||||||||| ||||||           |||||||||  ||||||||||||||||||||| |||||||||||||      
T  9731424 ttttttggatggttttatggatgacttaaacttaaagacttacgaaacttatgattttgtgcattaatttttgtattttgatgccaagttgagcataaca 9731523  T
Q  91 ttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |||||||| ||||||||| |||||||| | |||||||||||||||||||||||||    
T  9731524 ttttattatggtagtttggtataatttgcttttgtaattaagtcatattttgcac 9731578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 42242278 - 42242433
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| |||| | |||||||||||||||           ||||||||| |||| |||||||||||||||| ||||||||||||||     
T  42242278 cttttttggatggttttatggatgacctaaacttagagacttatgaaacttatgattttgtgcgttattttttgtattttgatgataagttgagcataag 42242377  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||| ||||||||  ||||||||   ||| |||||||||||||||||||||    
T  42242378 gttttattatggtagtttagtataatttgtatttctaattaagtcatattttgcac 42242433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 145
Target Start/End: Complemental strand, 31846736 - 31846633
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||| ||||||||||||| || ||||||||||||||| |||| |||| ||||||||| |||| ||| ||||| |||||||||||||||||    
T  31846736 tgattttgtgcgttcatttttgtattttaatactaagttgagcataacgtttcattatggtagtttggtatagtttacctttataattaagtcatatttt 31846637  T
Q  142 gcac 145  Q
    ||||    
T  31846636 gcac 31846633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 40830164 - 40830262
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| ||||| ||| |||||||||||||||| |||||    
T  40830164 tgattttgtgcgctaatttttgaattttgatgctaagttgagcataatgttttattatgatagtttggtataa-tttgctttgtaattaagtcacatttt 40830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 2103798 - 2103900
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||| | ||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||||| |||  |||| ||||||||||||| |||    
T  2103798 tgattttgcgagttaatttt-gtattttgatgctaagttgaacataatgttttattatggtggtttgatatactttgtctttataattaagtcatagttt 2103896  T
Q  142 gcac 145  Q
    ||||    
T  2103897 gcac 2103900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 142
Target Start/End: Complemental strand, 37654949 - 37654866
Alignment:
Q  59 ttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttg 142  Q
    ||||||||||||||| ||||||||||||||| |||||| | ||| ||||| |||| ||| | ||| ||||||||||||||||||    
T  37654949 ttttgtattttgatgttaagttgagcataatattttataatggtggtttggtatactttgcatttataattaagtcatattttg 37654866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 18899514 - 18899469
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  18899514 tgattttgtgtgttaatttttctattttgatactaagttaagcata 18899469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 15224529 - 15224571
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  15224529 ttttgtgtgttaatttttctattttgatactaagttaagcata 15224571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 24082678 - 24082823
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttatta 98  Q
    |||||||||||  |||||| ||||||||||||||||||||||  ||||||| | || |||||||||| ||||||||||| |||| ||||| |||||||||    
T  24082678 cttttttggattattttatggatggcttaaacttagagacttatgattttgcgcgtaaatttttgtactttgatgctaaattgaacataacgttttatta 24082777  T
Q  99 gggtagtttgatataattttcctttgtaattaagtcatattttgca 144  Q
     | ||||||| |||||||||||||||||||||||||||||||||||    
T  24082778 tgatagtttggtataattttcctttgtaattaagtcatattttgca 24082823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 141
Target Start/End: Original strand, 18984847 - 18984961
Alignment:
Q  29 aaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgta 126  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||    
T  18984847 aaacttagagacttatgattttgtgtgctaatttttgtattttgatgctaagttgagcaaaatgttttattatggtagtttggtataattttcctttgta 18984946  T
Q  127 attaagtcatatttt 141  Q
    ||| |||||| ||||    
T  18984947 atttagtcatgtttt 18984961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 12737704 - 12737550
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| || || ||||||||||||||||           ||||||||| ||||||||||||||||||||||||||||||||||||     
T  12737704 cttttttggatggttttatggaaggtttaaacttagagacttatgaaatttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataac 12737605  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||||||||| ||| |||||| | |||||||||||||||||||||||||||    
T  12737604 gttttattagggtag-ttggtataatatgcctttgtaattaagtcatattttgcac 12737550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 145
Target Start/End: Complemental strand, 8029472 - 8029320
Alignment:
Q  3 tttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgt 91  Q
    ||||||||||||||||| |||| |||||||||||||||||           ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  8029472 tttttggatggttttatggatgacttaaacttagagacttatgaaacttatgattttgtgcgttaatctttgtattttgatgctaagttgagcataatgt 8029373  T
Q  92 tttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||| |||||||||| |||||||   |||||||||||||||||||||||||    
T  8029372 tttattatggtagtttga-ataatttgtttttgtaattaagtcatattttgcac 8029320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 6387522 - 6387367
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagacttg-----------attttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| |||| |||||||||||||||||            ||| |||| ||||||||||||||||||||||||||||||||||||     
T  6387522 cttttttggatggttttatggatgacttaaacttagagacttatgaaacttataattatgtgcgttaatttttgtattttgatgctaagttgagcataac 6387423  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |||| ||||  | ||||| |||||||||||||||||||||||||||||||||||||    
T  6387422 gtttcattatagaagtttcatataattttcctttgtaattaagtcatattttgcac 6387367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 42423737 - 42423839
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||| | ||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||||||| |||||||||||| |||||||    
T  42423737 tgattttgggcgttaatttttgtattttgatgttaagttgaacataatgttttattatggtagtttggtataattttcccttgtaattaagttatatttt 42423836  T
Q  142 gca 144  Q
    |||    
T  42423837 gca 42423839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 27974588 - 27974436
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagac------------ttgattttgtgtgttaatttttgtattttgatgctaagttgagcataa 88  Q
    ||||||||||||||||||| |||| |||||||||||||||             |||||||||| ||||||||||||||||||||||||||||||||||||    
T  27974588 cttttttggatggttttatggatgacttaaacttagagacattatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataa 27974489  T
Q  89 tgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
     ||||||||| ||||||||| | |||||| |  ||||||||||||||||||||    
T  27974488 cgttttattatggtagtttggtgtaatttgctgttgtaattaagtcatatttt 27974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 28031857 - 28031705
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagac------------ttgattttgtgtgttaatttttgtattttgatgctaagttgagcataa 88  Q
    ||||||||||||||||||| |||| |||||||||||||||             |||||||||| ||||||||||||||||||||||||||||||||||||    
T  28031857 cttttttggatggttttatggatgacttaaacttagagacattatgaaacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataa 28031758  T
Q  89 tgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
     ||||||||| ||||||||| | |||||| |  ||||||||||||||||||||    
T  28031757 cgttttattatggtagtttggtgtaatttgctgttgtaattaagtcatatttt 28031705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 3007387 - 3007286
Alignment:
Q  44 attttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgc 143  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||  ||||||||||||||||| ||||||    
T  3007387 attttgtgcattaatttttgtattttgatgctaagttgagcataacgttttattatgatagtttggtataatttgtctttgtaattaagtcatgttttgc 3007288  T
Q  144 ac 145  Q
    ||    
T  3007287 ac 3007286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 12521974 - 12521876
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||| || |||||| ||||||||||||||||    
T  12521974 tgatttggtgcgttagtttttgtattttgatgctaagttgagcataatattttattatggtagtttggtataa-ttgcctttgaaattaagtcatatttt 12521876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 44977262 - 44977365
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||||||||||  ||||||||||||| |||| |||||  ||||||||  |||||||| ||||||||  ||||||||||||||||||||||    
T  44977262 tgattttgtgcgttaatttttaaattttgatgctaaattgaacataacattttattatagtagtttggtataatttatctttgtaattaagtcatatttt 44977361  T
Q  142 gcac 145  Q
    ||||    
T  44977362 gcac 44977365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 27869557 - 27869407
Alignment:
Q  2 ttttttggatggttttattgatggcttaaacttagagactt------------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    |||||||||||||||||| |||| |||||||||||||||||            ||||||||| ||||||||| || |||||||||||||||||||||||     
T  27869557 ttttttggatggttttatagatgacttaaacttagagactttatgaaacttatgattttgtgcgttaattttagt-ttttgatgctaagttgagcataac 27869459  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||  |||| |||| ||||||||  | ||||||||||||||||||||    
T  27869458 gttttattgtggtaatttggtataatttgtcgttgtaattaagtcatatttt 27869407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 41394395 - 41394498
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||||  |||||||||||| |||||||||||||| | || ||  |||||||| ||||||||| |||||||| || | ||||||| ||||||||||    
T  41394395 tgattttgtgcattaatttttgtaatttgatgctaagttaaacacaacattttattatggtagtttggtataatttgccgtagtaattaggtcatatttt 41394494  T
Q  142 gcac 145  Q
    ||||    
T  41394495 gcac 41394498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 27876630 - 27876563
Alignment:
Q  74 ctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||||||||| || |||||| ||||||||| |||||||| | |||||||||||||||||||||    
T  27876630 ctaagttgagcataacgtattattacggtagtttggtataatttgcttttgtaattaagtcatatttt 27876563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 28016811 - 28016744
Alignment:
Q  74 ctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||||||||| || |||||| ||||||||| |||||||| | |||||||||||||||||||||    
T  28016811 ctaagttgagcataacgtattattacggtagtttggtataatttgcttttgtaattaagtcatatttt 28016744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27878232 - 27878191
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt 42  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  27878232 cttttttggatggttttatagatgacttaaacttagagactt 27878191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27915176 - 27915135
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt 42  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  27915176 cttttttggatggttttatagatgacttaaacttagagactt 27915135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27961595 - 27961554
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt 42  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  27961595 cttttttggatggttttatagatgacttaaacttagagactt 27961554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28018413 - 28018372
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt 42  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  28018413 cttttttggatggttttatagatgacttaaacttagagactt 28018372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 35447012 - 35446919
Alignment:
Q  44 attttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcata 137  Q
    |||||| | |||||||||||| ||||||||||||||||| |||||   |||||||  || |||  ||||| ||| ||||| |||||||||||||    
T  35447012 attttgcgcgttaatttttgtgttttgatgctaagttgaacataacactttattattgtggttgaatatactttacctttataattaagtcata 35446919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 19484706 - 19484748
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  19484706 ttttgtgtgttaatttttctattttgatactaagttaagcata 19484748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 21486668 - 21486771
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| ||||| ||  ||||||||||||||||||||||    
T  21486668 tgattttgtgcgttaatttttgtattttgatgctaagttgagtataacgttttattatggtagtttggtataacttgtctttgtaattaagtcatatttt 21486767  T
Q  142 gcac 145  Q
    ||||    
T  21486768 gcac 21486771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 23017463 - 23017614
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    |||||||||||||||||||  ||| |||||||||||||||||           |||||||||  |||||||||||||||||||||||||||||||||||     
T  23017463 cttttttggatggttttatgaatgacttaaacttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctaagttgagcataac 23017562  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||||||| ||||||||| |||||| | | |||||||||||||||||||||    
T  23017563 gttttattatggtagtttggtataatctgcttttgtaattaagtcatatttt 23017614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 31445826 - 31445972
Alignment:
Q  3 tttttggatggttttattgatggcttaaacttagagactt----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgtt 92  Q
    ||||||||||||||||| ||||||||||||||||||||||          |||||||||  |||||||||||||||||||||||  |||||||||||||     
T  31445826 tttttggatggttttatggatggcttaaacttagagactttaaaacttatgattttgtgcattaatttttgtattttgatgctagattgagcataatgta 31445925  T
Q  93 ttattagggtagtttgatataattttcctttgtaattaagtcatatt 139  Q
    |||||| |||| |||| ||||||||  ||||||||||||||||||||    
T  31445926 ttattatggtactttggtataatttgtctttgtaattaagtcatatt 31445972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 43172607 - 43172707
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    ||||| |||| |||||||||||||||||| || |||||||| ||| | ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  43172607 tgattgtgtgcgttaatttttgtattttggtgttaagttgaacattacgttttattatggtagtttggtataattttcctttgtaattaagtcatatttt 43172706  T
Q  142 g 142  Q
    |    
T  43172707 g 43172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 145
Target Start/End: Original strand, 42611045 - 42611152
Alignment:
Q  42 tgattttgtgtgttaatttttgta-ttttgatgctaagttgagcataatgttttattagggtagt---ttgatataattttcctttgtaattaagtcata 137  Q
    ||||||||||  |||||||||||| ||||||||||||||| ||||||||||||||||| ||||||   |||| ||||||||||||||||||||||| |||    
T  42611045 tgattttgtgcattaatttttgtaattttgatgctaagttaagcataatgttttattatggtagtagtttgacataattttcctttgtaattaagtaata 42611144  T
Q  138 ttttgcac 145  Q
    ||||||||    
T  42611145 ttttgcac 42611152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 16710072 - 16710156
Alignment:
Q  61 ttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||||||||||||||||||||||  |||||||| | ||||||| |||||||| |||||| |||||||||||| |||||||    
T  16710072 ttgtattttgatgctaagttgagcataacattttattatgatagtttggtataatttgcctttgcaattaagtcataatttgcac 16710156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 17684308 - 17684392
Alignment:
Q  61 ttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||||||||||||||||||||||  |||||||| | ||||||| |||||||| |||||| |||||||||||| |||||||    
T  17684308 ttgtattttgatgctaagttgagcataacattttattatgatagtttggtataatttgcctttgcaattaagtcataatttgcac 17684392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 56 - 141
Target Start/End: Complemental strand, 5771737 - 5771652
Alignment:
Q  56 aatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||||||||||| ||||| || ||||| |||||| || | ||||||| |||||||| |||||||||||||||||||||||    
T  5771737 aatttttgtattttgatgttaagtggatcataacgttttactatgatagtttggtataatttgcctttgtaattaagtcatatttt 5771652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 37915665 - 37915576
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtc 134  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||   |||| ||| ||||||||| |||| ||| | ||| ||||||||||    
T  37915665 ttttgtgtgttaatttttctattttgatactaagttaagcataccatttttttatggtagtttggtatactttgcatttataattaagtc 37915576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 42043833 - 42043879
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataa 88  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||||    
T  42043833 tgattttgtgcattaatttttgtattttgatgctaacttgagcataa 42043879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 4639482 - 4639440
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  4639482 ttttgtgtgttaatttttctattttgatactaagttaagcata 4639440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Original strand, 14741944 - 14741986
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  14741944 ttttgtgtgttaatttttctattttgatactaagttaagcata 14741986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42610991 - 42611032
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt 42  Q
    ||||||||||||||||||| |||  |||||||||||||||||    
T  42610991 cttttttggatggttttatggattacttaaacttagagactt 42611032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 29716464 - 29716369
Alignment:
Q  50 tgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    ||||||||||||| |||||||||||||||||||||||||  |||||||| ||||||||| |||||||| |||||||||||||||||||||||||||    
T  29716464 tgtgttaatttttatattttgatgctaagttgagcataacattttattatggtagtttggtataatttgcctttgtaattaagtcatattttgcac 29716369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 144
Target Start/End: Complemental strand, 15286089 - 15285988
Alignment:
Q  43 gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataa-ttttcctttgtaattaagtcatatttt 141  Q
    |||||||||  ||||||||||||||||||||||||||||||||||| | ||||||| ||||| ||| ||||| |||||||||||||||||||||||||||    
T  15286089 gattttgtgccttaatttttgtattttgatgctaagttgagcataacg-tttattatggtagcttggtataatttttcctttgtaattaagtcatatttt 15285991  T
Q  142 gca 144  Q
    |||    
T  15285990 gca 15285988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 3032651 - 3032737
Alignment:
Q  59 ttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |||||||||||||| |||||||||||||||   ||||||| ||||||| | |||| |||   ||| |||||||||||| ||||||||    
T  3032651 ttttgtattttgattctaagttgagcataacactttattatggtagttgggtatattttgtatttataattaagtcattttttgcac 3032737  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 4841074 - 4841032
Alignment:
Q  44 attttgtgtgttaatttttgtattttgatgctaagttgagcat 86  Q
    |||||| |||||||||||||| |||| ||||||||||||||||    
T  4841074 attttgcgtgttaatttttgtgtttttatgctaagttgagcat 4841032  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 28622776 - 28622734
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  28622776 ttttgtgtgttaatttttctattttgatactaagttaagcata 28622734  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 145
Target Start/End: Original strand, 31913917 - 31914003
Alignment:
Q  59 ttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
    |||||||||||||||||||||| | |||||   ||||||| ||| |||   |||| |||  |||| |||||||||||||||||||||    
T  31913917 ttttgtattttgatgctaagttaaacataactctttattatggtggttatgtatactttgtctttataattaagtcatattttgcac 31914003  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 144
Target Start/End: Original strand, 35701756 - 35701857
Alignment:
Q  42 tgattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatatttt 141  Q
    |||||||||| ||||||||| ||||||  |||||||||||||||||| |  |||||  |||  || | |||| ||| ||||| |||||| ||||||||||    
T  35701756 tgattttgtgagttaatttt-gtatttaaatgctaagttgagcataacgcattattttggtgattgggtatactttgcctttttaattaggtcatatttt 35701854  T
Q  142 gca 144  Q
    |||    
T  35701855 gca 35701857  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 87
Target Start/End: Complemental strand, 37797726 - 37797684
Alignment:
Q  45 ttttgtgtgttaatttttgtattttgatgctaagttgagcata 87  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||    
T  37797726 ttttgtgtgttaatttttctattttgatactaagttaagcata 37797684  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 106
Target Start/End: Original strand, 21490141 - 21490189
Alignment:
Q  58 tttttgtattttgatgctaagttgagcataatgttttattagggtagtt 106  Q
    |||||||||||||||| | |||||| |||||| |||||||| |||||||    
T  21490141 tttttgtattttgatgtttagttgaacataatattttattatggtagtt 21490189  T

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Target: scaffold0573 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 9342 - 9492
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt--gattttgtgtgttaatttttgtattttgatgctaagttgagcataatgttttatta 98  Q
    |||||||||||||||||||  ||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  9342 cttttttggatggttttatgaatgacttaaacttagagacttatgattttgtgcgttaatttttgtattttgatgctaagttgagcataatattttatta 9441  T
Q  99 ggg--------tagtttgatataattttcctttgtaattaagtcatatttt 141  Q
     ||        ||||||||| ||||||  ||||| ||||||||||||||||    
T  9442 tggatttatgttagtttgatgtaatttgtctttgaaattaagtcatatttt 9492  T

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Target: scaffold0013 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 89764 - 89919
Alignment:
Q  1 cttttttggatggttttattgatggcttaaacttagagactt-----------gattttgtgtgttaatttttgtattttgatgctaagttgagcataat 89  Q
    ||||||||||||||||||| ||||||||||| ||||||||||           |||||||||  |||||||||||||||||||||||||||| |||||||    
T  89764 cttttttggatggttttatggatggcttaaatttagagacttatgaaacttatgattttgtgcattaatttttgtattttgatgctaagttgcgcataat 89863  T
Q  90 gttttattagggtagtttgatataattttcctttgtaattaagtcatattttgcac 145  Q
     |||||||| ||||||||  ||||||||  ||||||| ||||||||||||||||||    
T  89864 attttattatggtagtttcgtataatttgtctttgtacttaagtcatattttgcac 89919  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 136086 - 136154
Alignment:
Q  74 ctaagttgagcataatgttttattagggtagtttgatataattttcctttgtaattaagtcatattttg 142  Q
    ||||||||||||||| |||||||||   ||||||| |||| |||   |||||||||||||| |||||||    
T  136086 ctaagttgagcataacgttttattactatagtttggtatagtttgaatttgtaattaagtcgtattttg 136154  T

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