View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11950_low_22 (Length: 225)

Name: NF11950_low_22
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11950_low_22
NF11950_low_22
[»] chr1 (9 HSPs)
chr1 (1-214)||(6521745-6521958)
chr1 (119-212)||(47778065-47778158)
chr1 (127-214)||(6506903-6506990)
chr1 (1-57)||(6517077-6517133)
chr1 (119-214)||(47788185-47788280)
chr1 (144-211)||(6517220-6517287)
chr1 (123-214)||(47781971-47782062)
chr1 (4-57)||(6512681-6512734)
chr1 (1-39)||(6506771-6506809)
[»] scaffold0341 (4 HSPs)
scaffold0341 (127-214)||(928-1015)
scaffold0341 (127-214)||(8581-8668)
scaffold0341 (1-39)||(796-834)
scaffold0341 (1-39)||(8449-8487)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 6521958 - 6521745
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatccnnnnnnnnnttcaccactttgttaaactcaacctcatttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  6521958 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttg 6521859  T
Q  101 cgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6521858 cgttgtttgtattccaaacaaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtacca 6521759  T
Q  201 tccaattgcttctt 214  Q
    ||||||||||||||    
T  6521758 tccaattgcttctt 6521745  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 212
Target Start/End: Complemental strand, 47778158 - 47778065
Alignment:
Q  119 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttc 212  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| |||||||||||    
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttc 47778065  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 6506903 - 6506990
Alignment:
Q  127 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 214  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 6506990  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6517077 - 6517133
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 57  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  6517077 cctacagcatatttaaggtcactgtcccctgatgcagctctatttcttaaattatcc 6517133  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 47788280 - 47788185
Alignment:
Q  119 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 214  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctt 47788185  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 6517220 - 6517287
Alignment:
Q  144 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgctt 211  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| ||||||||||    
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgctt 6517287  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 47782062 - 47781971
Alignment:
Q  123 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 214  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctt 47781971  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 6512681 - 6512734
Alignment:
Q  4 acagcatatttaaggtcactgtcccctgatgcagctttatttcttaaactatcc 57  Q
    |||||||||||||||||||| || ||||||| |||| ||||||||||| |||||    
T  6512681 acagcatatttaaggtcactatcacctgatgaagctctatttcttaaattatcc 6512734  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 6506771 - 6506809
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagct 39  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  6506771 cctacagcatatttaaggtcactttcccccgatgcagct 6506809  T

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Target: scaffold0341 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 928 - 1015
Alignment:
Q  127 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 214  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 1015  T

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Target: scaffold0341; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 214
Target Start/End: Original strand, 8581 - 8668
Alignment:
Q  127 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctt 214  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttctt 8668  T

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Target: scaffold0341; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 796 - 834
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagct 39  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  796 cctacagcatatttaaggtcactttcccccgatgcagct 834  T

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Target: scaffold0341; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 8449 - 8487
Alignment:
Q  1 cctacagcatatttaaggtcactgtcccctgatgcagct 39  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  8449 cctacagcatatttaaggtcactttcccccgatgcagct 8487  T

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