View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_low_3 (Length: 568)
Name: NF11950_low_3
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 14772116 - 14771584
Alignment:
| Q |
1 |
ctcataggtcgatctcttaagtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttg |
100 |
Q |
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| T |
14772116 |
ctcataggtcgatctcttatgtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttg |
14772017 |
T |
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| Q |
101 |
ttaaatctattatggtaactgaatccattatacacctgtattgcagttggagttgccgtgacgattgggatggttctgcgactgcaaggaagaatgcgtc |
200 |
Q |
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| T |
14772016 |
ttaaatctattatggtaacttaatccattatacacctgtattgcagttggagttgccatgacgattgggatggttctgcgactgcaaggaagaatgcgtc |
14771917 |
T |
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| Q |
201 |
aaggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagcatctacccagaaagaatggatgcagaaagaat |
300 |
Q |
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| T |
14771916 |
aaggaagaataacaaagaaacagacaataacatcactcaaaaattcaaaatctaaacagtgcaaaagtatctacccagaaagaatggat----------- |
14771828 |
T |
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| Q |
301 |
ggatgcagcctgcttttggctaagctacattctcttttaacaataaaggcnnnnnnnnacgccatctattctagagtttagcacaaatccccatagcagt |
400 |
Q |
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| T |
14771827 |
----gcagcctgcttttggctaagctacattctcttttaacaataaaggc-tttttttacgccatctattctagagtttagcacaaacccccatagcagt |
14771733 |
T |
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| Q |
401 |
atcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgattgagattggtgagnnnnnn |
500 |
Q |
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| T |
14771732 |
atcgtgaaaaattggattggattgctgccgattctcattatagaggaaaaaataattaagaattatgttgtgattgatgattgagattggcgaggaaaaa |
14771633 |
T |
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| Q |
501 |
nncgcatgccttcgttcttgacagtaaaccatttaacacttgtgtcaac |
549 |
Q |
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| T |
14771632 |
aacacatgccttcgttcttggcagtaaaccgtttaacacttgtgtcaac |
14771584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 108
Target Start/End: Complemental strand, 17878844 - 17878747
Alignment:
| Q |
11 |
gatctcttaagtatgcttcaggtatatcattttccaggttaacttgttaattgttcgttaagttccttttaactttgtatattaaagttgttaaatct |
108 |
Q |
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| T |
17878844 |
gatctcttcagtttgtttcaggtatatcaattttagattttacttgttagttgttcattaagttccttttgactttgtatattagagtttttcaatct |
17878747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 15014234 - 15014113
Alignment:
| Q |
1 |
ctcataggtcgatctcttaagtatgcttcaggtatatcattttccaggttaacttgtta-attgttcgttaagttccttttaactttgtatat-taaagt |
98 |
Q |
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||||||| ||||||||||| || || ||||||||||| ||||| ||||| |||||||| || ||| |||| || ||||| ||||||||||| | |||| |
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| T |
15014234 |
ctcatagatcgatctcttatgtttgtttcaggtatattattttttaggtttacttgttagtttcttcattaaattgcttttgactttgtatatattaagt |
15014135 |
T |
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| Q |
99 |
tgttaaatctattatggtaact |
120 |
Q |
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| || ||||||| ||| ||||| |
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| T |
15014134 |
ttttcaatctatcatgctaact |
15014113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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