View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11950_low_4 (Length: 554)
Name: NF11950_low_4
Description: NF11950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11950_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 486; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Complemental strand, 39857281 - 39856755
Alignment:
| Q |
14 |
gatgaatggcgaataaagtgaatcgtgttctatgaaaatttatcattctggcatgtgaccaacaagaacaaaaagggccttttctaatggcatcttcggt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39857281 |
gatgaatggcgaataaagtgaatcgtgttctatgaaaatttatcattctggcatgtgaccaacaagaacaaaaagggccttttctaatggcatcttcggt |
39857182 |
T |
|
| Q |
114 |
taacttcaattatttagtgtttctgagtaaattcttcctattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaat |
213 |
Q |
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| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39857181 |
tgacttcaattatttagcgtttctgagtaaattcttcctattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaat |
39857082 |
T |
|
| Q |
214 |
caacatttcaagaaagtgaggtaattacacacccagttgatgcacaccaagttactgtttcatcggttttcttattgatttgtttttccatgaatgcagt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39857081 |
caacatttcaagaaagtgaggtaattacacacccagttgatgcacaccaagttactgtttcattggttttcttattgatttgtttttccatgaatgcagt |
39856982 |
T |
|
| Q |
314 |
tagaaaatggtgatattatatgctttcagaaagcttatgctattgatactaggaaatatttccacctttctgacgtgccttcattcttgaaaatgaaagc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39856981 |
tagaaaatggtgatattatatgctttcagaaagcttatgctattgatactaggaaatatttccacctttctgacgtgccttcattcttgaaaatgaaagc |
39856882 |
T |
|
| Q |
414 |
tattgattgccagg----tattttctttttgaggtttaataaatgcgatacaaaatgaaagctacccagttattctaatcatgtttctaggcttatcgtg |
509 |
Q |
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| T |
39856881 |
tattgattgccaggtatatattttctttttgaggtttaataaatgcgatacaaaatgaaagctacccagttattctaatcatgtttctaggcttatcttg |
39856782 |
T |
|
| Q |
510 |
aaggaatgttgtttccttggtcaggtt |
536 |
Q |
| |
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|| |||||||||||||||| ||||||| |
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| T |
39856781 |
aacgaatgttgtttccttgttcaggtt |
39856755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 150 - 361
Target Start/End: Complemental strand, 39897902 - 39897692
Alignment:
| Q |
150 |
cctattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggta-attacacaccca |
248 |
Q |
| |
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|||||||||||||||||||| |||||| ||||||||||||||||| |||| || | || ||| |||||||||||||||||||||| | |||| | ||| |
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| T |
39897902 |
cctattgttgtgcaggaaattaagtttgaaccaaatgtcatgtgtgagcctgtttaccagaaattaacatttcaagaaagtgaggtatagtacatatcca |
39897803 |
T |
|
| Q |
249 |
gttgatgcacaccaagttactgtttcatcggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagct |
348 |
Q |
| |
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||||||| ||| |||| || | |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
39897802 |
gttgatggtcactaagt--ctatatcattgagtttcttattgattcatttttccatgaatgcagttagaaaatggtgatattatatgccatcaaaaagct |
39897705 |
T |
|
| Q |
349 |
tatgctattgata |
361 |
Q |
| |
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| ||||||||||| |
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|
| T |
39897704 |
tctgctattgata |
39897692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 136 - 528
Target Start/End: Complemental strand, 39847352 - 39846955
Alignment:
| Q |
136 |
ctgagtaaattcttcctattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggt |
235 |
Q |
| |
|
||||||||||| | |||||||||||||||||||| | ||| ||||||| |||| |||||| |||||| ||||| ||| ||||||| |||| | ||||| |
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| T |
39847352 |
ctgagtaaattgtgcctattgttgtgcaggaaattagatttgaaccaaaagtcaagtgttttcctattgagaagaaattaacatttgaagataacgaggt |
39847253 |
T |
|
| Q |
236 |
a-attacacacccagttgatgcacaccaag----ttactgtttcatcggttttcttattgatttgttttt--ccatgaatgcagttagaaaatggtgata |
328 |
Q |
| |
|
| | || | ||||||||| || || ||| | || ||| || ||||||||||| ||||| ||||| | ||||||||||||||| |||||||||| |
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|
| T |
39847252 |
atagtaaatacccagttggcacatactaagaaattaacattttaattggttttcttatcgatttatttttttctatgaatgcagttagacaatggtgata |
39847153 |
T |
|
| Q |
329 |
ttatatgctttcagaaagcttatgctattgatactaggaaatatttccacctttctgacgtgccttcattcttgaaa-atgaaagctattgattgccagg |
427 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||||||| |||| || ||| | | || | || | ||||| | || || ||| | || | ||||| |
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| T |
39847152 |
ttatatgctttcaaaaagcttctgctatagatactaagaaacatatccgctatcctaatgttctttcatacatggaatatgtgtacaatcg----ccagg |
39847057 |
T |
|
| Q |
428 |
tattttctttttgaggtttaataaatgcgatacaaaatgaaagctacccagttattctaatcatgtttctaggcttatcgtgaa-ggaatgttgtttcct |
526 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||| |
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| T |
39847056 |
tattttctttttgagatttaataaatgcgatacgaaatgaaagctacccatttattcttatcctgtttctaggcttatcttgaactgaatgttgtttcct |
39846957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 173 - 346
Target Start/End: Original strand, 38979783 - 38979957
Alignment:
| Q |
173 |
gtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggta-attacacacccagttgatgcacaccaagttactgt |
271 |
Q |
| |
|
|||| |||||||||||| |||| ||||| || | | | ||| ||||||||||||||| |||||| | ||| |||||||||| ||||| |||||||||| |
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| T |
38979783 |
gtttgaaccaaatgtcaagtgtctgcctgttgacatgaaattaacatttcaagaaagcgaggtatagtactcacccagttggcacacactaagttactgt |
38979882 |
T |
|
| Q |
272 |
ttcatcggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaag |
346 |
Q |
| |
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| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38979883 |
acaactggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaag |
38979957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 150 - 349
Target Start/End: Complemental strand, 39864517 - 39864321
Alignment:
| Q |
150 |
cctattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggta-attacacaccca |
248 |
Q |
| |
|
||||||||||||||||| || | |||| |||||| |||||||||| |||| | | ||| ||| |||||||||||||||||||||| | ||| ||||| |
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| T |
39864517 |
cctattgttgtgcaggagattacgtttgaaccaactgtcatgtgtgagcctgtcgacaagaaattaacatttcaagaaagtgaggtataacacataccca |
39864418 |
T |
|
| Q |
249 |
gttgatgcacaccaagttactgtttcatcggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagct |
348 |
Q |
| |
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|||| |||| ||||||||| |||| ||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39864417 |
gttgt---acactaagttactgcatcattggttttcttattgatttatttt-ccgtgagtgcagttagaaaatggtgatattatatgctttcagaaagct |
39864322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 173 - 346
Target Start/End: Complemental strand, 39910686 - 39910512
Alignment:
| Q |
173 |
gtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggta-attacacacccagttgatgcacaccaagttactgt |
271 |
Q |
| |
|
|||| |||||||||||| |||| ||||| || | | | ||| ||||||||||||||| |||||| | || ||| ||||||| | ||| |||||||||| |
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|
| T |
39910686 |
gtttgaaccaaatgtcaagtgtctgcctgttgacatgaaattaacatttcaagaaagcgaggtatagtagacatccagttggcacccactaagttactgt |
39910587 |
T |
|
| Q |
272 |
ttcatcggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaag |
346 |
Q |
| |
|
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39910586 |
acaacaggttatcttattgatttgtatttccatgaatgcagttagaaaatggtgatattatatgctttcagaaag |
39910512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 152 - 349
Target Start/End: Original strand, 39736948 - 39737146
Alignment:
| Q |
152 |
tattgttgtgcaggaaataaagtttaaaccaaatgtcatgtgtttgcctattaagaaggaatcaacatttcaagaaagtgaggta-attacacacccagt |
250 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| | ||| ||| || | ||| ||| ||||||| |||||| ||||| | |||| ||||||| |
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|
| T |
39736948 |
tattgttgtgcaggaaattgagtttgaaccaaatgttaaatgtgatcctgttgacaagaaattaacatttacagaaagcaaggtatagtacatacccagt |
39737047 |
T |
|
| Q |
251 |
tgatgcacaccaagttactgtttcatcggttttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaaagctt |
349 |
Q |
| |
|
||||| ||| |||||||| | |||| | ||||| ||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||| |
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|
| T |
39737048 |
cgatgctcactaagttactttatcattgattttcatattgatttgtttttccatgaatgcagttgaacaatggtgctattatatgctttcagaaagctt |
39737146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 344
Target Start/End: Complemental strand, 37465555 - 37465492
Alignment:
| Q |
281 |
tttcttattgatttgtttttccatgaatgcagttagaaaatggtgatattatatgctttcagaa |
344 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | ||| |||| |||||||||||||||||||| |
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| T |
37465555 |
tttcttattgatttgttcttccgtgaatgcagcttgaagatggagatattatatgctttcagaa |
37465492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 536
Target Start/End: Complemental strand, 39910337 - 39910261
Alignment:
| Q |
461 |
aaaatgaaagctacccagttattctaatcatgtttctaggcttatcgtga-aggaatgttgtttccttggtcaggtt |
536 |
Q |
| |
|
||||||||||||||||| | ||||| ||||||||||||||| |||| ||| ||||||| |||||||| ||||||| |
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|
| T |
39910337 |
aaaatgaaagctacccattgattcttatcatgtttctaggcgtatcttgatctgaatgttttttccttgttcaggtt |
39910261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 37465834 - 37465784
Alignment:
| Q |
18 |
aatggcgaataaagtgaatcgtgttctatgaaaatttatcattctggcatg |
68 |
Q |
| |
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|||||| ||||||||| ||| ||||||||||||||||||| |||| ||||| |
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| T |
37465834 |
aatggcaaataaagtgcatcatgttctatgaaaatttatctttcttgcatg |
37465784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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